Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 5.3e-183 645.2 637 100.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.1e-92 345.1 640 73.4
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 5.4e-79 299.7 210 73.3
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 2.4e-71 274.2 659 72.4
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 4.6e-70 270.0 662 66.3
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 5.1e-69 266.5 661 73.1
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.5e-68 265.0 191 68.6
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 4.8e-67 260.0 620 75.3
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.4e-66 258.5 674 70.3
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 1.4e-66 258.5 216 61.6
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.4e-66 257.7 227 59.0
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 4.5e-65 253.4 251 53.0
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 4.5e-65 253.4 210 61.9
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 8.4e-64 249.2 660 71.2
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.4e-63 248.4 627 73.2
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.9e-63 248.1 653 71.2
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.7e-62 244.2 616 69.0
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.0e-61 240.7 256 52.3
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 5.1e-61 240.0 265 51.3
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 6.7e-61 239.6 613 64.9
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.1e-60 238.8 632 62.3
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.9e-60 238.0 634 66.1
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.9e-60 238.0 634 66.1
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 3.3e-60 237.3 660 70.2
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 4.3e-60 236.9 232 52.6
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 1.3e-59 235.3 627 63.5
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.3e-59 235.3 634 66.2
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 2.1e-59 234.6 629 63.3
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 2.1e-59 234.6 629 63.3
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 4.8e-59 233.4 175 62.9
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 6.3e-59 233.0 629 63.1
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.1e-58 232.3 664 69.1
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.8e-58 231.5 624 62.0
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 2.4e-58 231.1 630 65.7
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 3.1e-58 230.7 235 51.5
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 7.6e-57 226.1 127 80.3
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 5.0e-56 223.4 140 71.4
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.2e-55 220.7 203 54.7
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.6e-54 216.9 218 52.8
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.3e-53 215.3 241 50.2
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 2.3e-53 214.5 219 52.1
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.7e-53 212.6 265 48.3
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.5e-52 211.1 193 56.0
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 3.3e-52 210.7 663 68.5
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 1.6e-51 208.4 207 52.7
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 2.8e-51 207.6 178 57.9
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 4.8e-51 206.8 227 49.8
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 8.2e-51 206.1 162 60.5
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 5.0e-48 196.8 200 52.0
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 1.1e-47 195.7 615 67.8
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.4e-47 195.3 700 64.6
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 1.9e-47 194.9 203 51.7
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 9.4e-47 192.6 226 46.9
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 2.7e-46 191.0 177 55.9
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 2.7e-46 191.0 246 45.1
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.7e-46 191.0 574 72.5
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 3.6e-46 190.7 174 53.4
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.6e-46 190.7 615 57.6
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.0e-45 189.1 617 53.8
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.4e-45 188.7 587 69.3
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 2.3e-45 188.0 653 63.1
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.3e-45 188.0 560 73.4
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 3.0e-45 187.6 650 67.5
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 5.1e-45 186.8 703 64.3
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 2.0e-44 184.9 161 53.4
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 2.5e-44 184.5 108 83.3
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 9.7e-44 182.6 236 44.5
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 2.8e-43 181.0 176 51.1
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 8.2e-43 179.5 218 48.2
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.4e-42 177.9 151 58.3
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 3.1e-42 177.6 192 51.6
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.5e-41 175.3 605 70.6
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 2.6e-41 174.5 218 40.4
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 2.9e-40 171.0 603 66.8
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 8.5e-40 169.5 645 63.3
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 8.5e-40 169.5 645 63.3
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-39 169.1 612 58.7
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 4.2e-39 167.2 612 56.2
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 9.4e-39 166.0 571 67.1
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 2.1e-38 164.9 607 69.2
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 1.8e-37 161.8 640 66.7
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 1.8e-37 161.8 259 37.5
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 3.9e-37 160.6 159 54.7
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 5.1e-37 160.2 221 43.9
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.7e-35 155.2 223 43.5
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 3.7e-35 154.1 205 43.4
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.1e-34 152.5 200 45.5
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.8e-34 151.8 168 50.0
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 2.4e-34 151.4 171 48.5
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.4e-34 151.4 623 48.8
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 5.3e-34 150.2 106 72.6
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 3.8e-32 144.1 106 68.9
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.9e-31 141.7 107 69.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.5e-31 141.4 109 63.3
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 4.7e-30 137.1 85 76.5
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 4.1e-26 124.0 71 84.5
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 9.1e-26 122.9 86 73.3
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.2e-25 122.5 119 52.1
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.2e-25 122.5 88 63.6
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 4.5e-25 120.6 86 72.1
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.7e-24 118.6 86 72.1
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-23 115.9 202 36.1
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 5.5e-23 113.6 177 37.9
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.8e-21 108.6 119 55.5
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 2.3e-21 108.2 82 61.0
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 4.4e-20 104.0 76 59.2
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 2.8e-19 101.3 116 48.3
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 2.8e-11 74.7 64 60.9
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 6.3e-11 73.6 85 48.2
AL6G16490 Arabidopsis lyrata HOM05D006596 ORTHO05D008497 4.5e-09 67.4 130 27.7
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 5.9e-09 67.0 221 29.0
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 7.7e-09 66.6 157 26.1
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 1.0e-08 66.2 144 24.3
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 1.0e-08 66.2 169 27.8
Solyc12g035170.3 Solanum lycopersicum HOM05D002453 ORTHO05D002107 1.0e-08 66.2 148 34.5
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.3e-08 65.9 260 25.4
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 1.7e-08 65.5 130 27.7
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 1.7e-08 65.5 57 59.6
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 1.7e-08 65.5 69 53.6
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 2.3e-08 65.1 151 30.5
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 2.9e-08 64.7 148 27.0
arahy.Tifrunner.gnm1.ann1.Q40RKA Arachis hypogaea HOM05D000424 ORTHO05D000355 3.8e-08 64.3 157 26.1
Sabra06G0172500 Salix brachista HOM05D008470 ORTHO05D010644 3.8e-08 64.3 209 26.8
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 3.8e-08 64.3 199 28.1
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 6.6e-08 63.5 167 27.5
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.5e-07 62.4 141 31.9
PGR031G1616 Punica granatum HOM05D000424 ORTHO05D008586 1.5e-07 62.4 148 25.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.9e-07 62.0 144 30.6
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 2.5e-07 61.6 186 23.7
THA.LOC104815482 Tarenaya hassleriana HOM05D002737 ORTHO05D009499 4.3e-07 60.8 128 27.3
VMungo1309G1707 Vigna mungo HOM05D000424 ORTHO05D000355 4.3e-07 60.8 157 26.8
SMO361G0533 Selaginella moellendorffii HOM05D016509 ORTHO05D000003 5.6e-07 60.5 165 24.2
Carub.0006s0720 Capsella rubella HOM05D007202 ORTHO05D009125 7.3e-07 60.1 177 25.4
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 7.3e-07 60.1 191 26.7
TWI36G0676 Tripterygium wilfordii HOM05D006464 ORTHO05D007923 7.3e-07 60.1 163 26.4
FvH4_5g25662 Fragaria vesca HOM05D000424 ORTHO05D000355 9.5e-07 59.7 157 26.1
SMO361G0687 Selaginella moellendorffii HOM05D004933 ORTHO05D005465 9.5e-07 59.7 163 24.5
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 9.5e-07 59.7 197 22.3
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 1.2e-06 59.3 189 21.2
Phvul.009G129200 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.2e-06 59.3 157 26.1
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 1.2e-06 59.3 198 26.3
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.6e-06 58.9 162 24.7
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 2.1e-06 58.5 171 28.1
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 2.1e-06 58.5 202 24.8
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 2.1e-06 58.5 202 24.8
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 2.1e-06 58.5 202 24.8
ECA233G0992 Erigeron canadensis HOM05D000200 ORTHO05D001546 2.1e-06 58.5 151 25.8
Lj2C11T2 Lonicera japonica HOM05D006464 ORTHO05D007923 2.1e-06 58.5 205 25.9
Manes.18G081800 Manihot esculenta HOM05D000424 ORTHO05D000355 2.1e-06 58.5 172 25.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 2.8e-06 58.2 247 25.9
Glyma.06G116600 Glycine max HOM05D000424 ORTHO05D000355 2.8e-06 58.2 157 26.1
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.8e-06 58.2 174 27.0
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.8e-06 58.2 174 27.0
Lalb_Chr11g0066161 Lupinus albus HOM05D000424 ORTHO05D000355 2.8e-06 58.2 157 25.5
Prupe.1G490700 Prunus persica HOM05D000424 ORTHO05D000355 2.8e-06 58.2 157 26.1
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 2.8e-06 58.2 147 27.2
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 3.6e-06 57.8 126 24.6
Actinidia28087 Actinidia chinensis HOM05D004271 ORTHO05D006011 3.6e-06 57.8 171 26.3
Ah.16g106150 Amaranthus hybridus HOM05D006464 ORTHO05D007923 3.6e-06 57.8 167 26.3
Ca_16602_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 3.6e-06 57.8 191 23.0
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 3.6e-06 57.8 109 31.2
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 3.6e-06 57.8 180 24.4
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 3.6e-06 57.8 153 30.1
SEGI_24584 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 3.6e-06 57.8 164 24.4
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 3.6e-06 57.8 152 27.6
TPR.G30149 Trifolium pratense HOM05D000424 ORTHO05D000355 3.6e-06 57.8 280 22.9
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 3.6e-06 57.8 175 28.6
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 4.7e-06 57.4 155 26.5
Hma1.2p1_0151F.1_g067090 Hydrangea macrophylla HOM05D006464 ORTHO05D007923 4.7e-06 57.4 199 26.1
Medtr1g108270 Medicago truncatula HOM05D000424 ORTHO05D000355 4.7e-06 57.4 257 24.9
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 4.7e-06 57.4 125 30.4
Sabra04G0077900 Salix brachista HOM05D000424 ORTHO05D000355 4.7e-06 57.4 221 24.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 6.1e-06 57.0 109 30.3
Nn7g37559 Nelumbo nucifera HOM05D000424 ORTHO05D000355 6.1e-06 57.0 157 25.5
Ah.10g034010 Amaranthus hybridus HOM05D008470 ORTHO05D010644 8.0e-06 56.6 113 30.1
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 8.0e-06 56.6 203 26.1
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 8.0e-06 56.6 219 23.3
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 8.0e-06 56.6 165 27.9
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 8.0e-06 56.6 164 25.6


User provided reference genes

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