Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 2613.6 1348 100.0
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1995.3 1449 74.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1939.9 1400 74.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1934.8 1342 77.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1746.5 1381 68.0
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1604.3 1410 62.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1597.8 1381 62.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1592.8 1381 62.3
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1591.2 1377 62.2
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1588.2 1369 64.1
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1587.4 1381 62.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1582.0 1326 64.9
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1579.3 1381 62.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1560.8 1407 60.4
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1558.5 1368 62.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1552.3 1394 62.4
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1543.5 1343 63.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1541.9 1368 62.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1530.8 1419 60.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1530.0 1395 59.5
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1523.1 1382 60.6
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1517.7 1391 60.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1516.1 1396 60.6
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1506.1 1391 59.5
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1491.5 1126 71.8
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1486.9 1389 59.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1475.7 1408 57.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1470.3 1368 59.8
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1465.7 1392 59.1
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1463.7 1367 59.5
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1461.0 1407 57.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1444.1 1364 59.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1432.5 1366 58.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1425.6 1422 57.2
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1424.1 1388 56.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1423.7 1379 58.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1423.7 1385 57.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1422.9 1456 55.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1422.5 1390 56.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1421.4 1364 59.0
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1419.8 1333 58.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1419.1 1374 57.6
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1415.6 1402 57.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1407.5 1461 55.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1406.7 1218 63.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1403.7 1342 58.7
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1402.1 1361 57.1
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1400.2 1409 57.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1399.8 1392 57.0
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1399.0 1372 56.9
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1398.6 1362 57.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1392.1 1374 57.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1391.3 1389 55.8
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1389.4 1437 54.8
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1388.6 1375 56.3
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1380.2 1378 57.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1370.5 1367 56.6
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1366.7 1353 55.9
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1365.1 1365 55.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1364.7 1354 57.4
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1337.4 1357 56.8
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1374 55.3
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1325.8 1362 55.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1324.7 1368 55.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1315.8 1378 53.8
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1306.2 1379 54.4
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1302.7 1350 55.0
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1352 55.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1342 55.2
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1299.6 1349 54.9
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1299.3 1363 54.7
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1285.8 1373 53.5
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1285.4 1350 54.5
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1574 49.2
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1248.8 1350 52.4
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1232.6 1385 49.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1189.5 1592 47.3
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1122.1 1126 56.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 7.0e-302 1041.2 1379 44.2
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.2e-301 1040.4 988 57.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.0e-301 1039.6 1027 56.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 6.8e-297 1024.6 1009 57.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.9e-284 982.2 1037 54.6
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 7.3e-283 978.0 1162 49.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.3e-268 929.9 847 59.7
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.9e-267 926.8 1329 43.6
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 3.5e-245 852.8 736 62.9
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.8e-242 843.2 819 56.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.3e-231 807.7 725 59.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.1e-227 794.7 822 54.6
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 7.9e-205 718.8 1348 38.3
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.7e-186 656.8 522 65.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 7.5e-179 632.5 626 57.3
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.5e-174 618.2 444 72.5
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.6e-174 616.3 444 72.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 5.8e-163 579.7 1418 31.7
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.8e-155 553.1 546 57.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.8e-148 531.6 546 56.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.4e-148 531.2 400 69.8
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.9e-146 524.2 1412 30.3
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.2e-144 518.8 340 76.8
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.8e-130 470.7 676 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.0e-106 392.9 1019 32.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.3e-102 377.9 740 38.1
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-100 372.9 558 43.7
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.8e-100 372.1 266 70.7
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.8e-85 320.9 472 43.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 7.0e-84 317.0 354 54.8
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.9e-73 282.3 475 37.3
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.8e-68 265.8 404 42.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.4e-68 264.2 232 62.1
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.6e-66 256.9 337 46.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-63 249.6 443 38.1
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.8e-61 241.9 358 44.7
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-58 232.6 149 81.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.0e-56 223.8 131 84.0
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.0e-56 223.8 173 67.1
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-55 223.0 224 56.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.7e-53 216.1 170 68.8
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.8e-51 207.2 178 65.7
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 8.0e-48 197.2 223 48.0
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 8.3e-45 187.2 172 58.7
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-42 179.9 140 67.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 3.0e-42 178.7 174 57.5
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.9e-36 159.5 245 37.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.4e-36 159.1 209 48.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-36 158.7 261 46.0
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.7e-32 144.8 136 53.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-31 142.9 142 57.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.8e-31 142.9 650 26.0
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 8.9e-31 140.6 170 46.5
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 8.9e-31 140.6 255 35.3
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.2e-30 140.2 1163 22.7
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.6e-30 139.0 139 54.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 4.9e-29 134.8 408 30.9
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 5.1e-26 124.8 126 55.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.7e-24 118.2 77 72.7
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.1e-24 117.5 151 51.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.8e-23 116.3 1250 22.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-22 113.2 113 50.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 3.8e-21 108.6 555 24.7
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-20 106.7 108 54.6
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-20 106.7 71 77.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.9e-20 106.3 91 61.5
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 7.8e-19 100.9 171 40.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-16 93.2 61 70.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 4.8e-16 91.7 91 57.1
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.1e-15 90.5 145 41.4
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.5e-14 86.7 145 40.7
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.6e-14 85.9 94 47.9
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-13 83.2 118 43.2
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.9e-13 82.4 134 42.5
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 3.8e-13 82.0 51 74.5
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 4.9e-13 81.6 100 42.0
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-12 80.5 63 66.7
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.1e-11 76.3 135 39.3
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 2.1e-11 76.3 119 42.9
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 2.1e-11 76.3 95 42.1
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.7e-11 75.9 123 41.5
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 3.0e-10 72.4 73 52.1
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 7.4e-09 67.8 65 55.4


User provided reference genes

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