Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 5.0e-99 364.4 176 100.0
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.8e-61 239.6 140 85.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 9.2e-61 237.3 139 83.5
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 4.5e-60 235.0 139 84.9
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.5e-58 229.9 139 81.3
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 2.8e-57 225.7 139 78.4
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 4.7e-57 224.9 139 81.3
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 8.0e-57 224.2 139 77.7
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 6.8e-56 221.1 139 78.4
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.0e-55 219.5 139 78.4
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 5.7e-55 218.0 139 77.0
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.7e-55 218.0 146 74.7
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.9e-54 215.7 139 74.1
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.4e-53 212.6 147 72.8
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 9.2e-53 210.7 139 74.1
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.7e-52 209.1 139 74.1
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.5e-52 208.8 139 73.4
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.6e-52 208.4 146 71.2
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 4.6e-52 208.4 139 73.4
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 7.8e-52 207.6 139 74.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 7.8e-52 207.6 139 74.1
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.3e-51 206.8 139 74.1
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.3e-51 206.1 146 69.9
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 3.0e-51 205.7 139 70.5
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 3.0e-51 205.7 139 70.5
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 3.0e-51 205.7 139 73.4
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 5.0e-51 204.9 145 69.0
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.0e-51 204.9 139 71.9
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 6.6e-51 204.5 139 72.7
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 6.6e-51 204.5 139 72.7
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.1e-50 203.8 140 72.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.1e-50 203.8 139 69.1
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.1e-50 203.8 139 71.9
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.1e-50 203.8 139 71.9
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.1e-50 203.8 139 72.7
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.9e-50 203.0 139 71.2
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.3e-50 201.8 140 70.7
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 5.6e-50 201.4 139 71.9
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 5.6e-50 201.4 139 71.9
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 1.6e-49 199.9 139 71.2
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 2.1e-49 199.5 139 71.9
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.0e-49 197.6 125 78.4
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.4e-48 196.8 139 69.8
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.8e-48 196.4 139 69.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.3e-48 196.1 139 69.1
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.3e-48 196.1 139 69.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 4.0e-48 195.3 139 71.2
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 4.0e-48 195.3 131 73.3
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 4.0e-48 195.3 139 68.3
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 5.2e-48 194.9 138 68.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.2e-48 194.9 140 70.7
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 8.9e-48 194.1 139 67.6
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.2e-47 193.7 140 70.7
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.0e-47 193.0 140 70.0
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.6e-47 192.6 125 76.0
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.8e-47 191.4 125 74.4
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.5e-47 191.0 125 75.2
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 9.8e-47 190.7 139 67.6
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 9.8e-47 190.7 140 70.0
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 2.2e-46 189.5 140 70.0
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 3.7e-46 188.7 164 61.0
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 3.7e-46 188.7 139 68.3
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 4.9e-46 188.3 140 65.0
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 6.4e-46 188.0 141 69.5
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-45 186.4 139 68.3
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-45 186.4 139 68.3
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 5.4e-45 184.9 139 67.6
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 5.4e-45 184.9 139 69.1
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 5.4e-45 184.9 141 68.8
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 5.4e-45 184.9 141 68.8
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 7.0e-45 184.5 139 68.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 9.2e-45 184.1 136 69.1
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.6e-44 183.3 121 73.6
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 4.6e-44 181.8 145 60.0
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 4.6e-44 181.8 140 64.3
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-43 179.9 147 64.6
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.3e-43 179.5 139 66.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.3e-43 179.5 140 61.4
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.0e-43 178.3 140 63.6
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 6.6e-43 177.9 139 65.5
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 6.6e-43 177.9 140 62.9
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 8.6e-43 177.6 138 60.9
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.5e-42 176.0 121 71.1
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 3.3e-42 175.6 143 62.9
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 4.3e-42 175.3 139 64.7
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.2e-41 173.7 140 61.4
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-41 173.3 139 65.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.6e-41 173.3 146 59.6
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 3.6e-41 172.2 139 64.0
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.1e-41 171.0 139 64.0
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 8.1e-41 171.0 138 58.0
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.4e-40 170.2 144 60.4
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 5.2e-40 168.3 140 60.0
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.2e-39 167.2 139 59.7
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.5e-39 166.8 126 63.5
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 1.5e-39 166.8 147 59.2
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 5.8e-39 164.9 139 61.9
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 7.5e-39 164.5 227 44.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 7.5e-39 164.5 139 57.6
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 2.2e-38 162.9 136 58.8
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.2e-38 162.9 136 58.8
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.2e-38 162.9 138 56.5
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 2.9e-38 162.5 119 66.4
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 4.1e-37 158.7 120 65.0
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 7.1e-37 157.9 162 53.1
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.1e-37 157.9 140 60.7
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 9.2e-37 157.5 126 60.3
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 9.2e-37 157.5 126 60.3
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 9.2e-37 157.5 136 57.4
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.6e-36 156.8 126 60.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.6e-36 156.8 126 60.3
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.1e-36 156.4 126 59.5
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 2.1e-36 156.4 126 60.3
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 4.6e-36 155.2 124 60.5
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 4.6e-36 155.2 126 59.5
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 6.0e-36 154.8 151 53.6
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.3e-35 153.7 126 58.7
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 3.0e-35 152.5 126 57.9
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 8.6e-35 151.0 121 60.3
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 3.3e-34 149.1 145 53.1
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 4.3e-34 148.7 166 47.6
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 5.6e-34 148.3 126 56.3
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 9.5e-34 147.5 126 55.6
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-33 147.1 139 59.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 6.2e-33 144.8 141 54.6
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 8.1e-33 144.4 126 55.6
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 8.1e-33 144.4 139 51.1
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 2.0e-31 139.8 114 57.0
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 5.8e-31 138.3 114 59.6
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 1.3e-30 137.1 139 56.1
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.9e-29 133.3 154 47.4
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 5.4e-29 131.7 137 51.8
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.2e-29 131.0 180 43.9
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.2e-28 130.6 210 38.6
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 8.7e-27 124.4 140 51.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.1e-26 124.0 93 65.6
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.3e-26 122.1 108 59.3
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 7.3e-26 121.3 79 72.2
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.3e-26 121.3 78 71.8
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 3.1e-24 115.9 139 45.3
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 7.6e-23 111.3 108 52.8
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.7e-22 110.2 65 84.6
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.8e-22 109.0 152 47.4
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 3.8e-22 109.0 133 46.6
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.4e-21 107.1 84 58.3
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.2e-20 104.0 73 69.9
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.3e-18 95.9 79 63.3
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.3e-18 95.9 79 63.3
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.8e-17 92.8 65 70.8
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.6e-17 92.4 90 57.8
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 8.1e-17 91.3 135 40.0
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 6.9e-16 88.2 79 54.4
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.0e-16 87.8 67 70.1
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.1e-13 80.9 65 61.5
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.4e-13 80.5 67 58.2
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 7.1e-13 78.2 55 70.9
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 8.7e-11 71.2 71 53.5
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 5.6e-10 68.6 64 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 5.3e-08 62.0 129 34.1
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.6e-07 59.7 122 35.2
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.6e-07 59.7 66 50.0
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.4e-06 55.1 124 31.5


User provided reference genes

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