Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.8e-266 921.0 489 100.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-259 899.4 489 98.2
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.6e-219 764.6 492 79.5
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.1e-215 751.9 492 80.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.6e-209 731.1 506 77.3
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.8e-200 701.4 492 76.6
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.0e-199 698.4 495 73.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.5e-195 685.3 490 71.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.0e-194 683.7 492 72.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.1e-191 672.2 490 70.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-190 670.2 503 72.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.5e-190 668.3 490 70.6
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 7.6e-190 667.5 490 70.6
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.9e-188 662.9 490 71.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.5e-187 658.7 492 72.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.8e-186 656.4 499 68.3
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.1e-185 653.7 490 69.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.6e-184 649.8 490 67.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.2e-181 639.4 475 68.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 8.4e-181 637.5 490 67.3
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.5e-180 636.0 496 70.6
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.6e-176 623.2 494 66.4
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 6.3e-176 621.3 461 68.1
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.1e-175 620.5 460 71.5
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.4e-175 620.2 496 65.3
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.8e-175 619.8 493 68.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.8e-175 619.8 430 75.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.9e-175 617.8 491 68.6
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.2e-174 617.1 491 65.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.4e-174 615.5 492 65.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.9e-172 609.8 502 63.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.6e-171 606.7 499 63.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-170 604.0 498 65.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 4.3e-169 598.6 497 63.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 4.3e-169 598.6 490 65.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.7e-169 597.4 498 64.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.2e-168 596.3 493 63.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.8e-168 595.9 490 63.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 3.7e-168 595.5 490 63.5
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.4e-167 592.8 494 63.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.1e-167 592.0 490 65.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 5.3e-167 591.7 494 61.5
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.2e-166 590.5 492 66.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.0e-166 589.7 492 64.6
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.0e-166 589.7 511 60.3
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.6e-166 589.3 492 61.4
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.5e-166 588.6 493 63.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.9e-166 588.2 492 62.8
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 5.9e-166 588.2 490 64.3
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-165 586.3 490 64.3
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.0e-165 585.1 492 61.0
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 5.0e-165 585.1 493 62.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.1e-164 583.9 544 60.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.5e-164 582.8 490 63.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.2e-163 580.5 507 62.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.6e-163 578.9 493 64.1
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.7e-162 574.7 498 63.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-161 573.2 521 59.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.3e-161 572.4 493 60.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-160 570.5 489 61.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.2e-160 569.7 490 62.0
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.4e-159 566.2 466 69.7
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.4e-159 566.2 490 62.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.1e-159 565.8 494 60.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.1e-159 565.8 421 68.2
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-159 565.8 482 60.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.2e-158 563.9 490 58.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.2e-158 563.9 492 63.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.6e-158 562.8 490 58.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-157 560.8 477 61.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 6.5e-157 558.1 460 66.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.9e-156 556.6 493 59.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.9e-156 556.6 409 69.7
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.5e-156 556.2 490 61.0
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 6.1e-155 551.6 468 64.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-154 550.4 513 57.5
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.3e-154 549.7 491 58.5
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.0e-154 549.3 444 63.5
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.0e-153 546.6 490 57.6
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.3e-153 545.8 495 60.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 5.7e-153 545.0 510 57.1
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 3.7e-152 542.3 496 58.1
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.3e-151 538.5 451 65.0
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-150 537.3 468 60.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.5e-150 535.8 490 57.3
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.9e-150 535.0 497 57.7
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.7e-147 525.4 457 61.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.2e-146 521.9 490 57.8
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.4e-145 519.2 490 57.1
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.7e-144 516.9 490 56.9
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.2e-142 510.8 436 60.8
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.6e-142 510.4 491 58.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.7e-142 509.6 497 56.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.7e-142 509.6 453 60.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.7e-142 508.1 510 55.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 3.2e-140 502.7 482 55.8
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 9.4e-140 501.1 497 53.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.7e-139 499.6 493 55.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.0e-138 497.7 590 49.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.4e-138 497.3 498 54.2
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.8e-138 496.9 522 53.3
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.0e-138 496.1 491 55.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.0e-138 495.7 490 55.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 8.8e-138 494.6 495 57.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 7.5e-137 491.5 490 54.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-136 490.7 490 55.5
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.2e-136 490.0 491 56.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-136 489.2 540 52.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.9e-136 488.8 540 52.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.8e-135 486.9 491 53.4
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-135 485.7 490 53.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.2e-134 484.2 393 64.4
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.5e-134 482.3 495 53.3
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.9e-134 481.9 490 54.7
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.0e-133 481.1 490 55.5
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.7e-133 480.3 498 55.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.3e-133 479.9 482 57.9
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 8.6e-133 478.0 452 56.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.5e-132 477.2 477 54.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 5.6e-132 475.3 490 55.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-131 473.4 490 53.9
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.1e-131 473.4 490 53.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 4.4e-129 465.7 404 58.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.8e-127 460.3 489 52.8
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.8e-127 460.3 465 53.1
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 7.8e-126 454.9 490 51.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 9.5e-124 448.0 490 52.9
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.8e-114 415.2 449 52.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 7.5e-113 411.8 482 51.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.5e-113 411.8 464 49.6
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.2e-112 410.2 396 56.1
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.4e-111 406.8 490 48.0
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.0e-109 401.4 492 48.8
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.9e-103 380.6 492 44.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.1e-98 364.8 216 79.2
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.1e-98 363.2 352 58.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.8e-94 348.6 413 49.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 3.0e-93 346.7 216 75.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 3.0e-93 346.7 448 44.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.9e-93 346.3 453 43.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.5e-92 343.6 414 48.8
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.2e-87 326.2 377 46.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.6e-84 315.8 356 46.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.6e-83 313.2 222 64.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.0e-81 307.4 292 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 9.9e-81 305.1 321 49.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 2.8e-67 260.4 176 70.5
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-60 238.4 156 78.2
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.2e-59 234.2 321 49.8
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 5.0e-56 223.0 216 58.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-53 214.5 135 72.6
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 5.2e-45 186.4 247 40.1
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.3e-43 181.8 274 43.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.2e-35 154.5 244 33.6
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.8e-35 153.3 227 41.9
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 5.9e-33 146.4 94 69.1
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 7.7e-33 146.0 190 37.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 9.4e-31 139.0 122 65.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 7.0e-26 122.9 76 71.1
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.9e-24 117.5 71 74.6
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.5e-20 105.1 117 54.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 9.2e-18 95.9 56 76.8
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.9e-16 90.9 241 26.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-13 82.0 96 51.0
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.1e-10 72.4 43 79.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.0e-09 68.2 74 50.0
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 5.0e-08 63.5 97 35.1
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.3e-07 60.8 62 54.8


User provided reference genes

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