Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.4e-108 396.4 213 100.0
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 4.7e-59 231.9 220 63.2
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 5.7e-57 224.9 225 62.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.8e-56 222.6 223 57.8
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.4e-55 219.5 231 58.4
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.6e-54 216.9 231 58.0
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.6e-54 216.9 228 58.8
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 2.0e-54 216.5 219 60.3
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 2.9e-53 212.6 241 58.5
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 5.0e-53 211.8 244 54.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 2.5e-52 209.5 235 58.3
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.6e-51 206.8 220 56.8
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 9.7e-49 197.6 225 54.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.3e-48 197.2 227 52.9
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 8.2e-48 194.5 226 58.0
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.1e-47 194.1 270 51.1
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.8e-47 193.4 182 62.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 3.1e-47 192.6 243 56.8
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 4.1e-47 192.2 256 51.2
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 4.1e-47 192.2 244 51.2
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 4.5e-46 188.7 257 49.0
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.3e-45 187.2 182 57.7
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.7e-45 186.8 269 48.3
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.7e-45 186.8 240 52.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.5e-45 184.9 245 51.4
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 6.5e-45 184.9 246 50.4
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 6.5e-45 184.9 236 55.5
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.5e-44 183.7 227 51.5
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.5e-44 183.7 181 60.8
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 7.2e-44 181.4 267 49.1
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.2e-43 180.6 238 52.1
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.7e-43 179.5 235 54.9
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 4.7e-43 178.7 234 49.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 4.7e-43 178.7 248 47.6
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.7e-43 178.7 231 54.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 6.1e-43 178.3 223 53.4
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 8.0e-43 177.9 260 48.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.0e-42 177.6 216 52.3
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-42 176.8 220 52.3
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 8.8e-42 174.5 244 49.2
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-41 174.1 222 51.8
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.0e-41 173.3 168 61.9
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.0e-41 173.3 243 49.4
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 5.7e-41 171.8 213 50.7
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.3e-40 170.6 238 47.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.3e-40 170.6 246 49.2
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.7e-40 170.2 237 49.4
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 3.7e-40 169.1 213 50.2
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 8.3e-40 167.9 249 51.8
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.4e-39 167.2 250 52.0
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 2.4e-39 166.4 218 49.1
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 3.1e-39 166.0 243 49.0
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 5.4e-39 165.2 188 53.2
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.2e-38 164.1 270 45.2
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.5e-38 162.2 186 56.5
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 5.9e-38 161.8 238 43.3
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.2e-37 159.8 221 48.4
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.9e-37 159.5 171 54.4
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.8e-37 159.1 218 48.6
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.5e-37 158.3 218 48.6
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.5e-36 157.1 234 47.4
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.9e-36 156.8 208 51.0
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-36 156.8 221 49.3
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.5e-36 156.4 218 48.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.2e-36 156.0 225 50.2
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 3.2e-36 156.0 234 44.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.5e-36 155.2 226 50.0
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.5e-36 155.2 225 50.2
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.2e-36 154.8 237 47.7
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 7.2e-36 154.8 184 55.4
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.2e-35 154.1 209 47.4
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.1e-35 153.3 227 47.6
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.7e-35 152.9 238 44.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 3.6e-35 152.5 243 47.3
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.6e-35 152.5 219 47.9
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.6e-35 152.5 230 48.3
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 4.7e-35 152.1 223 50.2
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.0e-35 151.4 239 49.4
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.0e-34 149.1 242 47.5
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.5e-33 147.1 245 45.7
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.5e-33 147.1 240 41.7
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 4.4e-33 145.6 222 45.5
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.4e-33 145.6 239 43.5
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 5.7e-33 145.2 239 43.5
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 5.7e-33 145.2 239 43.5
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 9.8e-33 144.4 240 43.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.3e-32 144.1 239 43.5
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.3e-32 144.1 239 43.5
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.9e-32 142.1 232 43.1
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 6.3e-32 141.7 229 47.6
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 6.3e-32 141.7 229 45.0
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.1e-31 141.0 224 50.4
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-31 141.0 247 41.3
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-31 140.6 231 41.1
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.8e-31 140.2 231 45.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.1e-31 139.4 231 47.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 5.0e-29 132.1 239 41.4
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 8.6e-29 131.3 240 42.1
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 1.5e-28 130.6 233 40.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.5e-28 130.6 216 42.6
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.5e-28 129.8 240 41.7
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.5e-28 129.8 240 41.7
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.5e-28 129.8 240 41.7
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.5e-28 129.8 241 40.7
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 4.3e-28 129.0 170 51.8
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.6e-28 128.6 242 38.8
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 7.3e-28 128.3 233 39.9
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 7.3e-28 128.3 240 41.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 9.5e-28 127.9 238 39.5
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-27 127.1 233 39.9
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.6e-27 127.1 233 39.9
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.6e-27 127.1 252 40.5
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.6e-27 127.1 227 41.0
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.1e-27 126.7 234 38.0
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 4.7e-27 125.6 223 44.8
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 6.1e-27 125.2 224 44.6
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 6.1e-27 125.2 246 38.2
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.0e-27 124.8 243 38.3
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.0e-25 120.2 259 39.0
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 2.0e-25 120.2 170 45.9
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.6e-25 119.8 240 39.6
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.4e-25 119.4 248 39.9
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 4.4e-25 119.0 238 45.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 7.5e-25 118.2 184 45.1
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.3e-24 117.5 252 36.1
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.3e-24 114.8 203 43.3
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.3e-24 114.8 216 39.8
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.3e-24 114.8 216 39.8
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.8e-23 113.6 202 41.6
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.2e-23 112.8 217 39.6
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 4.1e-23 112.5 142 52.1
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 5.4e-23 112.1 215 41.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.2e-22 110.9 181 45.9
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.6e-22 110.5 230 37.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.7e-22 109.8 239 35.1
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.6e-22 109.0 184 47.3
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 5.9e-22 108.6 261 36.0
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 7.8e-22 108.2 213 37.1
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.3e-21 106.7 112 58.9
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.3e-21 106.7 168 44.6
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 6.6e-21 105.1 179 43.6
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.9e-20 103.6 237 35.0
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.9e-20 103.6 130 52.3
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.5e-20 103.2 163 44.8
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.3e-20 102.4 164 44.5
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 3.6e-19 99.4 123 52.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 3.6e-19 99.4 229 35.8
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.3e-18 96.7 240 34.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.2e-17 94.4 224 33.9
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.8e-17 92.0 138 48.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 2.7e-14 83.2 238 33.2
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.0e-13 79.0 233 34.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.9e-12 77.0 75 61.3
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 3.3e-12 76.3 192 34.4
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.6e-12 75.5 171 36.8
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 9.5e-12 74.7 89 51.7
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 6.8e-10 68.6 171 35.7
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 7.5e-09 65.1 158 35.4
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.7e-08 63.9 79 46.8
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 9.2e-07 58.2 102 40.2
Rhsim05G0037900 Rhododendron simsii HOM05D010576 ORTHO05D012109 2.1e-06 57.0 121 38.8


User provided reference genes

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