Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.8e-69 265.8 130 100.0
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.2e-55 218.0 129 86.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.4e-36 155.2 117 66.7
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.2e-34 148.7 117 66.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.3e-32 143.3 117 65.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.1e-31 140.2 117 62.4
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.3e-31 138.7 117 59.8
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 4.3e-31 138.3 117 59.8
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 4.1e-26 121.7 117 53.8
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.8e-25 117.5 117 51.3
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.7e-24 116.3 114 57.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 3.0e-24 115.5 128 49.2
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 3.9e-24 115.2 112 55.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.9e-24 115.2 119 53.8
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.9e-24 115.2 111 55.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.5e-23 113.2 113 54.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.4e-21 105.9 112 51.8
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.4e-21 105.9 118 49.2
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 4.0e-21 105.1 118 50.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.8e-21 104.4 117 48.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-20 103.2 136 47.8
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 2.6e-20 102.4 120 51.7
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.4e-20 101.7 84 58.3
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 5.8e-20 101.3 115 47.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.3e-19 100.1 112 50.0
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-19 99.8 111 50.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.7e-19 99.8 109 47.7
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.2e-19 99.4 109 46.8
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.9e-19 99.0 118 45.8
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.8e-19 98.6 117 47.0
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 3.8e-19 98.6 122 49.2
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.9e-19 98.2 109 48.6
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.9e-19 98.2 109 48.6
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.4e-18 96.7 110 47.3
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.9e-18 96.3 120 49.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.4e-18 95.9 124 50.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 5.4e-18 94.7 111 51.4
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 7.1e-18 94.4 119 47.1
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.2e-18 94.0 112 52.7
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.1e-17 92.8 119 46.2
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 3.5e-17 92.0 108 50.0
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.6e-17 91.7 122 43.4
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.0e-17 91.3 119 43.7
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.0e-17 91.3 119 43.7
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 6.0e-17 91.3 113 46.9
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.0e-16 90.5 122 45.1
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-16 89.7 88 50.0
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-16 88.6 72 58.3
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 3.9e-16 88.6 113 47.8
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 5.1e-16 88.2 113 48.7
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.6e-16 87.8 88 48.9
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 6.6e-16 87.8 122 47.5
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.7e-16 87.4 118 43.2
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 8.7e-16 87.4 143 44.1
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.9e-15 86.3 113 41.6
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.9e-15 86.3 84 50.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.5e-15 85.9 106 46.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.5e-15 85.9 118 44.9
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.3e-15 85.5 77 54.5
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.3e-15 85.5 117 42.7
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.6e-15 84.7 74 54.1
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 7.3e-15 84.3 78 55.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 7.3e-15 84.3 75 54.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 9.6e-15 84.0 108 43.5
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 9.6e-15 84.0 117 44.4
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.3e-14 83.6 106 45.3
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.3e-14 83.6 106 45.3
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.6e-14 83.2 123 45.5
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.6e-14 83.2 112 41.1
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-14 83.2 79 51.9
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.6e-14 82.0 120 43.3
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 4.8e-14 81.6 108 45.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.8e-14 81.6 106 45.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.1e-14 80.9 106 44.3
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.1e-14 80.9 133 41.4
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-13 80.5 116 45.7
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 1.8e-13 79.7 109 45.0
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.8e-13 79.7 119 42.9
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.8e-13 79.7 113 43.4
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.8e-13 79.7 116 40.5
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.4e-13 79.3 116 45.7
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.1e-13 79.0 113 40.7
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.0e-13 78.6 116 44.8
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 5.3e-13 78.2 115 40.0
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 9.0e-13 77.4 73 57.5
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.0e-12 76.3 142 40.1
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.0e-12 76.3 123 38.2
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.6e-12 75.9 81 49.4
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.6e-12 75.9 74 54.1
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.4e-12 75.1 115 42.6
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 4.4e-12 75.1 118 41.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 5.8e-12 74.7 64 59.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 7.6e-12 74.3 73 53.4
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 9.9e-12 73.9 113 38.9
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 9.9e-12 73.9 116 41.4
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.3e-11 73.6 133 38.3
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.2e-11 72.8 70 51.4
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.2e-11 72.8 60 55.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.2e-11 72.8 79 51.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 6.4e-11 71.2 79 50.6
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 6.4e-11 71.2 92 44.6
Actinidia08253 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-10 70.5 78 53.8
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.1e-10 70.5 115 42.6
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.1e-10 70.5 115 42.6
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.9e-10 69.7 102 39.2
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.4e-10 69.3 150 32.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 4.2e-10 68.6 76 48.7
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.2e-10 68.6 106 37.7
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.4e-10 68.2 101 35.6
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 7.1e-10 67.8 111 35.1
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 9.3e-10 67.4 111 38.7
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.1e-09 66.2 111 41.4
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 2.1e-09 66.2 73 53.4
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.1e-09 66.2 111 36.9
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.1e-09 66.2 68 52.9
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.1e-09 66.2 84 44.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 2.7e-09 65.9 70 52.9
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 3.5e-09 65.5 47 59.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 4.6e-09 65.1 65 47.7
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 4.6e-09 65.1 47 57.4
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 7.8e-09 64.3 49 55.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 7.8e-09 64.3 74 45.9
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 7.8e-09 64.3 114 41.2
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 1.7e-08 63.2 72 47.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.3e-08 62.8 43 60.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 3.0e-08 62.4 63 49.2
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 5.1e-08 61.6 55 50.9
Potri.009G089900 Populus trichocarpa HOM05D004288 ORTHO05D004997 5.1e-08 61.6 119 37.0
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 6.6e-08 61.2 112 38.4
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 6.6e-08 61.2 101 35.6
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 8.7e-08 60.8 110 37.3
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 8.7e-08 60.8 111 39.6
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.1e-07 60.5 117 39.3
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.5e-07 60.1 110 38.2
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.5e-07 60.1 111 38.7
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.9e-07 59.7 61 49.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.9e-07 59.7 64 48.4
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 1.9e-07 59.7 116 34.5
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 2.5e-07 59.3 55 54.5
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 2.5e-07 59.3 110 36.4
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.3e-07 57.8 51 49.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.3e-07 57.8 81 39.5
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.6e-07 57.4 106 38.7
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.3e-06 57.0 43 55.8
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.6e-06 56.6 58 43.1
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.6e-06 55.5 68 50.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 8.1e-06 54.3 55 50.9
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 8.1e-06 54.3 55 50.9


User provided reference genes

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