Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041892 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.3e-85 319.7 162 100.0
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 2.2e-13 79.7 44 86.4
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 8.5e-13 77.8 44 84.1
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 1.1e-12 77.4 46 80.4
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 1.1e-12 77.4 44 84.1
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 1.5e-12 77.0 44 84.1
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 1.5e-12 77.0 44 84.1
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 1.9e-12 76.6 110 45.5
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 2.5e-12 76.3 44 81.8
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 2.5e-12 76.3 44 81.8
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 2.5e-12 76.3 44 81.8
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 4.2e-12 75.5 44 79.5
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 5.5e-12 75.1 91 49.5
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 5.5e-12 75.1 44 79.5
Actinidia37813 Actinidia chinensis HOM05D002156 ORTHO05D002328 7.2e-12 74.7 44 84.1
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 7.2e-12 74.7 44 79.5
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 7.2e-12 74.7 44 79.5
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 7.2e-12 74.7 44 79.5
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 9.5e-12 74.3 44 79.5
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 9.5e-12 74.3 44 79.5
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 9.5e-12 74.3 42 85.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 1.2e-11 73.9 44 79.5
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 1.6e-11 73.6 57 68.4
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.6e-11 73.6 44 77.3
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 2.1e-11 73.2 110 43.6
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 2.7e-11 72.8 110 41.8
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 6.1e-11 71.6 125 41.6
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 6.1e-11 71.6 44 75.0
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 6.1e-11 71.6 44 75.0
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 8.0e-11 71.2 44 72.7
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 8.0e-11 71.2 44 72.7
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 8.0e-11 71.2 44 77.3
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 8.0e-11 71.2 44 77.3
THA.LOC104815441 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 8.0e-11 71.2 44 77.3
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 1.0e-10 70.9 57 64.9
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 1.0e-10 70.9 44 77.3
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 1.4e-10 70.5 44 77.3
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 1.4e-10 70.5 44 77.3
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.4e-10 70.5 44 77.3
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 1.4e-10 70.5 44 72.7
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 1.8e-10 70.1 44 77.3
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 1.8e-10 70.1 44 77.3
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 1.8e-10 70.1 44 75.0
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 1.8e-10 70.1 44 72.7
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 1.8e-10 70.1 44 72.7
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.8e-10 70.1 91 45.1
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.3e-10 69.7 44 72.7
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 2.3e-10 69.7 44 75.0
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 2.3e-10 69.7 44 70.5
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 2.3e-10 69.7 44 72.7
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 2.3e-10 69.7 91 46.2
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 2.3e-10 69.7 44 75.0
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.0e-10 69.3 44 77.3
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.0e-10 69.3 44 77.3
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 3.0e-10 69.3 44 77.3
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 3.0e-10 69.3 44 72.7
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 3.0e-10 69.3 44 70.5
MBI11_g23644_MAGBIO Magnolia biondii HOM05D002156 ORTHO05D002328 5.2e-10 68.6 91 45.1
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 5.2e-10 68.6 57 63.2
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 6.8e-10 68.2 44 72.7
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 6.8e-10 68.2 44 70.5
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 6.8e-10 68.2 44 70.5
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 8.8e-10 67.8 91 47.3
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 1.2e-09 67.4 52 63.5
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 1.2e-09 67.4 44 75.0
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 1.2e-09 67.4 44 72.7
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 1.5e-09 67.0 109 39.4
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 1.5e-09 67.0 57 63.2
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.5e-09 67.0 45 75.6
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.5e-09 67.0 45 75.6
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.5e-09 67.0 45 75.6
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 1.5e-09 67.0 44 72.7
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 1.5e-09 67.0 57 63.2
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 72.7
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 2.0e-09 66.6 44 70.5
Os02g0825600 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 2.0e-09 66.6 59 59.3
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.6e-09 66.2 110 38.2
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 3.4e-09 65.9 44 70.5
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 4.4e-09 65.5 44 68.2
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 5.7e-09 65.1 44 70.5
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 9.8e-09 64.3 44 72.7
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.3e-08 63.9 44 68.2
Oeu017489.1 Olea europaea HOM05D002156 ORTHO05D002328 1.3e-08 63.9 44 70.5
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 2.2e-08 63.2 42 71.4
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 2.8e-08 62.8 75 46.7
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 6.3e-08 61.6 91 38.5
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 1.1e-07 60.8 44 68.2
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.4e-07 60.5 44 65.9
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 4.1e-07 58.9 44 65.9
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 4.1e-07 58.9 44 65.9
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 4.1e-07 58.9 110 34.5
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 5.4e-07 58.5 52 55.8
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 7.0e-07 58.2 44 65.9
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 9.2e-07 57.8 91 39.6
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.2e-06 57.4 97 36.1
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 1.2e-06 57.4 44 59.1
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 1.6e-06 57.0 44 59.1
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 2.0e-06 56.6 46 56.5
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 2.7e-06 56.2 44 59.1
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 5.9e-06 55.1 44 56.8


User provided reference genes

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