Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041884 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-144 516.5 264 100.0
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.6e-128 460.7 274 88.7
CSS0004888 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-125 453.4 269 88.5
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.3e-123 444.9 290 82.4
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.9e-118 429.5 275 84.7
CSS0039150 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.0e-100 369.0 262 77.9
CSS0029313 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-95 354.0 265 76.2
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 5.0e-63 245.4 290 53.8
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.2e-56 224.2 316 49.7
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 3.9e-55 219.2 287 48.4
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.3e-50 204.1 359 44.3
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.1e-46 191.0 279 45.9
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 9.9e-43 177.9 289 42.2
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 4.6e-40 169.1 273 43.2
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 8.7e-39 164.9 295 40.7
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 4.8e-37 159.1 307 38.8
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.7e-34 150.6 290 40.7
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 4.6e-32 142.5 284 39.8
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 7.9e-32 141.7 220 44.1
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 1.7e-31 140.6 287 36.6
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 3.9e-31 139.4 286 37.4
RcHm_v2.0_Chr5g0021121 Rosa chinensis HOM05D003515 ORTHO05D004347 5.1e-31 139.0 287 37.3
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 4.3e-30 136.0 291 36.4
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.6e-30 135.6 289 36.3
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.4e-28 131.0 328 34.5
CSS0035626 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.1e-28 129.8 86 80.2
CSS0032761 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-27 127.9 93 75.3
CSS0002123 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.5e-27 127.5 93 74.2
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 2.6e-27 126.7 291 36.1
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 3.8e-26 122.9 257 38.5
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 2.4e-25 120.2 290 35.5
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 3.2e-25 119.8 283 35.0
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.8e-23 114.0 284 35.9
Hma1.2p1_0088F.1_g045250 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 5.1e-23 112.5 141 48.9
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 7.4e-22 108.6 286 33.9
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 8.1e-21 105.1 200 38.5
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.1e-20 104.8 272 32.7
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 6.9e-20 102.1 197 38.6
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 9.0e-20 101.7 299 31.1
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 2.0e-19 100.5 290 31.4
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 2.6e-19 100.1 213 37.6
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 4.5e-19 99.4 202 39.6
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 5.8e-19 99.0 275 32.4
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 1.0e-18 98.2 277 33.9
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 4.9e-18 95.9 276 33.0
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 4.9e-18 95.9 276 33.3
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 1.1e-17 94.7 266 30.8
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 5.5e-17 92.4 270 30.0
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 9.3e-17 91.7 289 31.1
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.1e-16 90.5 272 32.4
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 2.1e-16 90.5 285 32.3
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 2.7e-16 90.1 284 31.0
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 3.5e-16 89.7 272 33.1
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.5e-14 84.3 272 31.2
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 4.3e-14 82.8 290 30.7
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 7.4e-14 82.0 280 31.4
MD10G1227100 Malus domestica HOM05D003515 ORTHO05D004347 7.4e-14 82.0 180 36.7
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 3.7e-13 79.7 305 27.2
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.8e-12 77.4 241 32.0
TPR.G28148 Trifolium pratense HOM05D003515 ORTHO05D004347 4.1e-12 76.3 123 43.1
Cpa.g.sc30.106 Carica papaya HOM05D003515 ORTHO05D004347 4.5e-11 72.8 122 36.9
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 4.5e-11 72.8 280 28.2
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 5.9e-11 72.4 267 30.3
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 7.6e-11 72.0 154 37.7
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 7.6e-11 72.0 283 26.9
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 1.0e-10 71.6 251 27.5
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.3e-10 71.2 200 31.0
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 2.2e-10 70.5 277 28.2
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 2.2e-10 70.5 277 27.8
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 2.2e-10 70.5 283 28.3
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 8.5e-10 68.6 238 31.5
Phvul.007G101032 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.4e-09 67.8 170 31.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 3.2e-09 66.6 291 29.2
MSTRG.2875 Avicennia marina HOM05D003515 ORTHO05D004347 4.2e-09 66.2 216 31.9
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 1.6e-08 64.3 299 27.4
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 6.1e-08 62.4 274 27.7
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 7.9e-08 62.0 167 35.3
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 2.3e-07 60.5 115 32.2
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.3e-07 60.5 204 29.4
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.3e-07 60.5 276 27.5
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 3.0e-07 60.1 73 45.2
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 6.7e-07 58.9 204 28.9
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 6.7e-07 58.9 262 26.3
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 8.7e-07 58.5 52 51.9
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 1.9e-06 57.4 203 30.5
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 1.9e-06 57.4 51 49.0
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 1.9e-06 57.4 126 34.9
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 3.3e-06 56.6 217 28.6
AUR62040333 Chenopodium quinoa HOM05D003515 ORTHO05D004347 3.3e-06 56.6 113 34.5
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 4.3e-06 56.2 51 49.0
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 5.7e-06 55.8 72 45.8


User provided reference genes

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