Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.8e-162 575.9 293 100.0
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.2e-159 565.1 294 98.6
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.8e-139 498.8 299 87.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.2e-137 493.4 297 86.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.5e-137 491.5 302 84.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.6e-134 483.0 301 83.4
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 4.6e-134 481.5 302 82.8
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.0e-133 480.3 302 83.1
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-133 479.9 297 83.5
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.8e-133 479.6 300 84.3
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.1e-132 476.9 302 82.1
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 5.7e-132 474.6 296 84.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 5.7e-132 474.6 302 82.1
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.8e-131 471.5 300 83.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.4e-130 469.2 302 81.5
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.4e-130 469.2 312 79.8
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 9.1e-130 467.2 301 82.4
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.0e-129 466.1 347 74.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.4e-129 465.3 302 80.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.3e-128 463.4 300 81.3
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-128 463.4 302 81.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.1e-127 460.3 302 80.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.1e-127 460.3 298 82.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.2e-127 458.8 303 78.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.5e-127 458.0 302 80.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 9.4e-127 457.2 298 80.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-126 456.8 303 79.9
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.2e-126 456.8 302 79.1
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.6e-126 456.4 303 79.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 4.7e-126 454.9 297 82.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.4e-125 453.4 303 79.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.1e-125 451.4 300 79.7
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 4.4e-124 448.4 297 79.1
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.2e-123 446.0 296 79.4
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-123 446.0 297 78.5
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 8.2e-123 444.1 302 79.8
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.3e-122 441.4 298 78.9
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 9.1e-122 440.7 299 78.9
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.5e-121 439.9 302 77.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.5e-121 439.9 293 79.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.5e-121 438.3 291 79.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.3e-120 436.8 302 78.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.9e-120 435.6 302 77.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-119 432.6 292 77.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.2e-119 432.2 302 76.2
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.7e-118 429.1 293 77.5
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.7e-118 429.1 256 88.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.6e-118 428.7 295 77.3
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.6e-118 428.7 301 75.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.7e-118 428.3 293 76.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.7e-118 428.3 293 76.8
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.3e-117 426.0 294 74.1
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.3e-117 426.0 294 77.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-117 425.2 307 73.6
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-117 425.2 293 76.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 3.9e-117 425.2 295 76.3
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.2e-117 424.9 294 76.9
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.7e-117 424.5 294 76.9
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 8.8e-117 424.1 296 76.0
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 8.8e-117 424.1 302 75.2
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.1e-116 423.7 293 77.5
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-116 423.3 295 76.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-116 422.9 295 75.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 5.7e-116 421.4 261 84.7
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.7e-116 420.6 293 77.1
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-115 420.2 296 76.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 4.8e-115 418.3 295 76.6
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-114 417.2 299 74.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.1e-114 417.2 301 74.1
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.3e-114 414.8 299 74.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.2e-113 413.7 262 82.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-113 413.3 303 73.6
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.0e-113 412.9 302 73.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.5e-113 412.1 293 77.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 7.7e-113 411.0 257 82.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.2e-112 409.5 257 82.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.8e-112 408.7 299 73.6
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.8e-112 408.7 270 82.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.5e-111 406.8 318 69.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.5e-111 406.8 257 82.1
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.9e-111 406.4 293 76.1
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.2e-111 404.4 271 76.8
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 9.4e-111 404.1 322 68.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 9.4e-111 404.1 297 73.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 9.4e-111 404.1 297 72.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 9.4e-111 404.1 271 76.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.2e-110 403.7 294 75.9
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.7e-110 402.5 303 71.9
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.7e-110 401.7 295 72.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 6.1e-110 401.4 299 72.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 8.0e-110 401.0 257 84.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 8.0e-110 401.0 296 74.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-109 400.2 297 72.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.8e-109 399.8 300 72.7
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-109 399.4 298 73.2
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.8e-109 397.5 249 82.7
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-108 396.7 302 71.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.3e-108 395.6 212 95.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 9.7e-108 394.0 292 72.3
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.2e-107 392.9 302 72.5
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.2e-107 392.9 297 71.7
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.7e-107 392.1 303 73.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-104 384.0 246 81.3
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-104 383.3 246 81.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-104 383.3 303 71.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 3.8e-104 382.1 245 82.0
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 5.0e-104 381.7 246 80.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 3.2e-103 379.0 257 77.8
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.2e-103 379.0 215 89.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.2e-102 377.1 246 79.7
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.7e-102 375.2 272 73.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-100 370.5 243 81.9
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 7.5e-100 367.9 300 67.7
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 6.3e-99 364.8 316 65.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.2e-97 360.5 247 76.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.7e-97 359.4 254 74.0
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.5e-95 350.9 288 64.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.4e-92 342.4 297 65.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.4e-92 342.0 274 69.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.7e-91 340.1 277 67.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-88 330.5 297 63.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.7e-88 330.1 224 79.5
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.6e-87 325.1 297 64.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.6e-84 316.2 246 69.5
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.9e-83 312.0 178 86.5
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.2e-82 309.3 252 67.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.5e-81 305.8 239 72.4
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.3e-80 303.9 215 77.2
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-80 303.5 179 87.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.3e-75 287.3 300 53.7
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.7e-75 287.0 303 53.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 6.4e-75 285.0 256 62.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 4.1e-74 282.3 271 59.8
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 3.5e-73 279.3 269 58.4
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.0e-73 278.5 327 47.7
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.0e-72 277.7 223 66.4
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.2e-69 265.4 178 73.6
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.0e-68 263.5 230 62.6
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.7e-67 260.4 176 72.7
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.9e-61 238.0 163 76.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 7.6e-60 235.0 139 87.1
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.8e-59 232.6 204 65.2
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 6.4e-59 231.9 256 57.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.1e-50 201.8 162 67.3
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 5.1e-48 195.7 145 70.3
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 6.6e-48 195.3 218 47.2
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 9.6e-47 191.4 172 63.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.1e-41 173.7 119 78.2
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-39 167.9 116 74.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.9e-31 140.6 86 80.2
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-29 134.8 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 6.5e-27 125.6 64 93.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-17 92.8 66 75.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.0e-16 90.1 110 50.0
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.5e-15 87.0 92 53.3
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 5.7e-15 85.9 110 49.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-13 80.9 51 80.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-11 75.1 55 70.9


User provided reference genes

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