Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-158 563.1 272 100.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.9e-158 562.4 271 99.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-108 397.1 245 77.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 9.0e-108 394.0 245 77.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.3e-102 375.6 236 75.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 6.3e-101 371.3 247 72.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.2e-99 367.1 242 72.3
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 6.5e-98 361.3 253 71.1
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.7e-96 355.9 250 70.8
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.8e-93 345.9 247 68.4
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 4.8e-93 345.1 236 69.1
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 6.3e-93 344.7 241 69.7
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 8.2e-93 344.4 247 69.6
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.1e-92 344.0 226 73.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.8e-92 343.2 243 67.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.1e-92 342.4 245 68.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.0e-92 341.3 246 68.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 2.0e-91 339.7 246 67.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 7.7e-91 337.8 222 74.8
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.9e-90 335.9 236 69.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.0e-90 335.1 247 68.4
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.5e-90 334.3 236 68.6
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.9e-89 333.2 236 67.8
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.9e-89 333.2 237 67.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.5e-89 332.8 243 65.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 7.2e-89 331.3 236 65.7
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.2e-88 330.5 240 65.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.2e-88 330.5 247 65.6
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.6e-88 330.1 236 66.5
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.1e-88 329.7 252 67.5
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.1e-88 329.7 252 67.1
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 8.0e-88 327.8 253 62.5
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 8.0e-88 327.8 237 65.8
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.0e-87 327.4 238 65.5
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.0e-87 327.4 236 68.6
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.4e-87 327.0 236 66.9
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.4e-87 327.0 237 67.5
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.8e-87 326.6 246 66.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.3e-87 326.2 241 66.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-87 326.2 244 65.2
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.0e-87 325.5 232 66.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 4.0e-87 325.5 234 64.5
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 5.2e-87 325.1 249 63.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 8.8e-87 324.3 233 67.4
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.0e-86 323.2 236 67.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.0e-86 323.2 242 66.5
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-86 323.2 242 66.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 4.4e-86 322.0 237 65.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.4e-86 322.0 242 66.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 5.7e-86 321.6 242 64.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 7.5e-86 321.2 297 57.9
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.7e-86 320.9 246 65.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 9.7e-86 320.9 257 63.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.3e-85 320.5 237 64.1
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-85 320.5 233 67.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.3e-85 320.5 245 67.3
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.7e-85 320.1 239 65.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.2e-85 319.7 238 62.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 8.2e-85 317.8 234 65.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.4e-84 317.0 248 62.9
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 4.1e-84 315.5 235 63.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.2e-83 313.9 238 64.3
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.2e-83 313.9 247 64.0
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.2e-83 313.9 243 64.6
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.2e-83 313.9 257 61.5
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.6e-83 313.5 231 68.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.7e-83 312.8 247 64.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.7e-83 312.8 247 64.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-83 312.4 221 68.8
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 5.9e-83 311.6 237 65.8
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 5.9e-83 311.6 239 63.6
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.9e-82 309.3 220 67.7
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 5.0e-82 308.5 244 63.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 5.0e-82 308.5 244 63.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.0e-82 308.5 251 62.9
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 5.0e-82 308.5 252 61.1
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 6.5e-82 308.1 236 63.6
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.1e-81 307.4 254 59.8
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.9e-81 306.6 238 63.0
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 5.5e-81 305.1 233 65.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-80 303.1 238 63.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.1e-80 303.1 193 73.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-80 302.0 238 62.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-79 300.8 245 60.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.8e-79 300.1 238 64.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.0e-79 298.9 276 57.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.2e-79 298.5 244 61.1
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.2e-78 297.4 240 60.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.5e-78 297.0 233 61.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.5e-78 297.0 243 64.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.5e-78 297.0 240 60.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.6e-78 296.2 241 63.1
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.4e-78 295.4 238 60.5
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.7e-77 293.5 189 74.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.7e-77 292.4 237 63.3
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.8e-77 292.0 241 60.2
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-76 289.7 267 56.6
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 3.1e-76 289.3 268 56.3
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 5.4e-76 288.5 223 64.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.7e-75 286.2 175 77.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.5e-75 285.8 263 58.2
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.3e-74 283.9 239 60.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.0e-74 282.0 178 76.4
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 6.5e-74 281.6 263 57.0
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 3.2e-73 279.3 175 74.3
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 7.2e-73 278.1 180 72.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.7e-72 276.2 185 71.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.1e-72 275.0 271 53.9
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 6.1e-72 275.0 187 69.5
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.0e-71 274.2 178 71.3
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.4e-71 273.9 324 48.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 5.2e-71 271.9 185 70.3
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.2e-71 271.9 189 70.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-70 270.4 181 70.2
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.5e-70 270.4 247 53.8
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.6e-70 269.6 242 56.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.4e-70 269.2 175 73.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 4.4e-70 268.9 220 60.9
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.3e-69 267.3 186 68.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.7e-69 266.9 175 72.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 6.3e-69 265.0 240 52.9
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.4e-68 263.8 226 54.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.1e-68 262.7 178 69.7
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.1e-68 262.7 171 73.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.4e-68 261.9 184 67.4
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 9.2e-68 261.2 244 56.6
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.2e-67 260.8 170 73.5
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.2e-67 260.8 170 73.5
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-67 260.4 179 69.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 7.7e-67 258.1 171 70.2
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.7e-66 256.9 190 65.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.9e-66 256.1 162 74.1
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 6.6e-66 255.0 164 72.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.1e-65 254.2 157 71.3
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 7.3e-65 251.5 181 70.2
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.2e-64 250.8 235 54.5
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-63 247.3 186 66.7
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 4.9e-61 238.8 185 61.1
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.4e-60 237.3 227 54.6
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.4e-60 235.3 218 58.3
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.5e-57 227.3 183 61.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.8e-55 220.3 147 72.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.4e-54 215.7 168 63.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 2.9e-53 213.0 209 54.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 2.9e-53 213.0 209 54.1
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.7e-53 212.6 127 74.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-51 206.8 126 78.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.3e-50 203.4 124 71.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 6.0e-43 178.7 125 68.8
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.0e-42 176.4 168 50.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.9e-36 157.1 228 38.6
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 6.2e-32 142.1 116 56.9
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 3.6e-24 116.3 109 59.6
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.4e-23 114.4 134 46.3
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.9e-21 106.7 134 44.8
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.5e-19 99.8 68 67.6
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.6e-16 89.7 60 65.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.8e-16 89.4 202 28.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.9e-13 79.3 48 62.5


User provided reference genes

Program Settings