Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.7e-112 408.7 204 100.0
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 9.5e-86 320.5 204 76.0
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 5.4e-81 304.7 206 74.3
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.1e-80 302.8 188 75.5
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.6e-80 301.6 188 75.5
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 6.6e-79 297.7 224 67.0
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.1e-78 297.0 208 69.7
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 1.5e-78 296.6 197 73.6
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.9e-78 296.2 231 66.7
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 2.5e-78 295.8 165 85.5
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 4.3e-78 295.0 197 71.6
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 7.3e-78 294.3 197 71.1
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 9.6e-78 293.9 194 75.8
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.2e-77 293.5 197 72.6
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.2e-77 293.5 212 70.3
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.2e-77 293.5 212 70.3
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.6e-77 293.1 186 73.7
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.1e-77 292.7 188 76.1
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 2.8e-77 292.4 194 72.2
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 4.7e-77 291.6 215 67.9
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 8.1e-77 290.8 161 86.3
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.4e-76 290.0 187 74.9
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.4e-76 290.0 187 74.9
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.4e-76 289.3 162 82.7
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 5.2e-76 288.1 166 79.5
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.2e-75 287.0 161 82.6
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.5e-75 286.6 204 68.6
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.0e-75 286.2 164 81.7
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 3.4e-75 285.4 195 71.3
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 3.4e-75 285.4 191 72.3
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 7.6e-75 284.3 201 67.7
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 9.9e-75 283.9 185 73.0
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 9.9e-75 283.9 198 70.2
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.3e-74 283.5 190 70.5
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.7e-74 283.1 163 79.1
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 2.2e-74 282.7 186 69.9
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 2.2e-74 282.7 178 75.3
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 4.9e-74 281.6 200 69.0
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 8.4e-74 280.8 160 80.6
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.9e-73 279.6 190 69.5
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.9e-73 279.6 175 74.9
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.4e-73 278.1 214 68.2
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 7.1e-73 277.7 198 66.7
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 9.3e-73 277.3 190 71.1
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 9.3e-73 277.3 190 71.1
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.2e-72 276.9 169 74.6
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 1.6e-72 276.6 205 64.4
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 2.1e-72 276.2 191 69.6
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.7e-72 275.8 190 69.5
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.7e-72 275.8 192 68.8
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 2.7e-72 275.8 200 68.0
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.5e-72 275.4 161 79.5
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 3.5e-72 275.4 165 77.6
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 7.8e-72 274.2 198 68.2
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 7.8e-72 274.2 187 69.5
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 3.9e-71 271.9 170 73.5
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 5.1e-71 271.6 191 65.4
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 5.1e-71 271.6 161 78.9
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 5.1e-71 271.6 192 64.1
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.1e-70 270.4 161 76.4
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 1.1e-70 270.4 185 68.1
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 3.3e-70 268.9 195 67.2
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 3.3e-70 268.9 198 66.2
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 3.3e-70 268.9 161 76.4
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 5.6e-70 268.1 157 78.3
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 5.6e-70 268.1 198 64.6
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 1.3e-69 266.9 175 70.3
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.3e-69 266.9 188 67.0
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 2.1e-69 266.2 200 66.5
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 2.1e-69 266.2 191 66.0
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.1e-69 266.2 180 68.3
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 3.6e-69 265.4 163 73.6
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 6.2e-69 264.6 170 72.9
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 8.1e-69 264.2 190 63.7
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 2.4e-68 262.7 174 71.8
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 9.0e-68 260.8 210 62.4
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 2.6e-67 259.2 165 70.9
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 9.9e-67 257.3 161 72.7
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.2e-65 251.9 162 74.1
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 7.1e-65 251.1 157 73.2
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 2.8e-61 239.2 190 58.9
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 3.6e-61 238.8 193 58.0
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 3.6e-61 238.8 193 58.0
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 4.8e-61 238.4 200 61.5
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 1.8e-60 236.5 193 57.5
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 2.0e-59 233.0 189 57.7
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 3.4e-59 232.3 161 64.6
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 4.5e-59 231.9 189 58.2
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 5.8e-59 231.5 161 65.2
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 5.8e-59 231.5 161 65.2
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 1.3e-58 230.3 157 66.2
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 2.2e-58 229.6 190 56.3
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 8.4e-58 227.6 190 56.8
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 1.9e-57 226.5 165 65.5
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 2.4e-57 226.1 140 73.6
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 2.3e-55 219.5 177 60.5
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 4.3e-54 215.3 145 71.0
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.3e-53 213.8 167 61.7
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 4.5e-51 205.3 124 73.4
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 2.7e-48 196.1 166 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 6.9e-44 181.4 154 54.5
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 9.0e-44 181.0 114 73.7
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.3e-42 177.2 112 73.2
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 6.5e-42 174.9 173 48.6
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 4.2e-41 172.2 124 66.9
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 9.3e-41 171.0 121 68.6
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 3.0e-39 166.0 140 58.6
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 5.1e-39 165.2 106 75.5
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 5.1e-39 165.2 90 83.3
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 9.7e-38 161.0 111 68.5
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 1.8e-36 156.8 163 44.2
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.9e-34 149.4 127 55.9
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 5.3e-28 128.6 152 43.4
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.0e-23 114.4 196 32.1
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 3.0e-23 112.8 161 38.5
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 9.7e-22 107.8 164 40.2
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 4.5e-19 99.0 51 82.4
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 5.0e-18 95.5 54 79.6
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 6.5e-18 95.1 59 72.9
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.0e-15 86.3 54 72.2
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.0e-15 86.3 54 72.2
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 2.0e-14 83.6 67 59.7
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 5.0e-10 68.9 56 66.1
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.5e-09 66.6 38 78.9


User provided reference genes

Program Settings