Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041858 Camellia sinensis var. sinensis HOM05D005609 ORTHO05D006871 1.9e-153 545.8 276 100.0
Actinidia05794 Actinidia chinensis HOM05D005609 ORTHO05D006871 1.6e-112 409.8 238 86.6
Dinv43582 Davidia involucrata HOM05D005609 ORTHO05D006871 5.4e-108 394.8 239 84.1
Hma1.2p1_0973F.1_g243010 Hydrangea macrophylla HOM05D005609 ORTHO05D006871 1.6e-104 383.3 241 82.2
Cfa022162 Carpinus fangiana HOM05D005609 ORTHO05D006871 6.8e-103 377.9 239 80.8
MSTRG.20658 Avicennia marina HOM05D005609 ORTHO05D006871 3.4e-102 375.6 237 78.5
CiPaw.14G015500 Carya illinoinensis HOM05D005609 ORTHO05D006871 4.4e-102 375.2 237 79.3
Sopen09g033380 Solanum pennellii HOM05D005609 ORTHO05D006871 4.4e-102 375.2 235 80.4
Solyc09g090460.3 Solanum lycopersicum HOM05D005609 ORTHO05D006871 7.5e-102 374.4 235 80.0
Eucgr.E03531 Eucalyptus grandis HOM05D005609 ORTHO05D006871 9.8e-102 374.0 236 80.1
MD07G1087900 Malus domestica HOM05D005609 ORTHO05D006871 9.8e-102 374.0 235 80.4
Manes.05G059500 Manihot esculenta HOM05D005609 ORTHO05D006871 2.9e-101 372.5 241 79.3
Lsat_1_v5_gn_4_38680 Lactuca sativa HOM05D005609 ORTHO05D006871 3.7e-101 372.1 237 81.9
RcHm_v2.0_Chr1g0343911 Rosa chinensis HOM05D005609 ORTHO05D006871 3.7e-101 372.1 235 80.4
Nitab4.5_0000204g0040 Nicotiana tabacum HOM05D005609 ORTHO05D006871 4.9e-101 371.7 235 77.0
Nitab4.5_0011341g0010 Nicotiana tabacum HOM05D005609 ORTHO05D006871 1.1e-100 370.5 235 77.0
FvH4_7g08680 Fragaria vesca HOM05D005609 ORTHO05D006871 1.9e-100 369.8 235 79.6
FAN06G0131 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.9e-100 369.8 235 79.6
Prupe.2G114600 Prunus persica HOM05D005609 ORTHO05D006871 3.2e-100 369.0 234 81.2
TWI23G1015 Tripterygium wilfordii HOM05D005609 ORTHO05D006871 4.1e-100 368.6 239 80.8
Rhsim07G0039900 Rhododendron simsii HOM05D005609 ORTHO05D006871 5.4e-100 368.2 274 71.2
SGA_v2.0_scaffold45G17248 Striga asiatica HOM05D005609 ORTHO05D006871 5.4e-100 368.2 238 79.0
FAN03G0926 Fragaria x ananassa HOM05D005609 ORTHO05D006871 7.0e-100 367.9 235 79.1
Peaxi162Scf00103g01924 Petunia axillaris HOM05D005609 ORTHO05D006871 1.2e-99 367.1 235 77.0
CAN.G221.2 Capsicum annuum HOM05D005609 ORTHO05D006871 2.7e-99 365.9 235 79.1
GSVIVG01022468001 Vitis vinifera HOM05D005609 ORTHO05D006871 3.5e-99 365.5 237 79.7
Potri.002G134900 Populus trichocarpa HOM05D005609 ORTHO05D006871 1.0e-98 364.0 240 78.8
TAR375G0879 Trochodendron aralioides HOM05D005609 ORTHO05D006871 1.0e-98 364.0 230 82.6
Aqoxy3G02536 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 1.3e-98 363.6 239 77.0
MD02G1225900 Malus domestica HOM05D005609 ORTHO05D006871 2.3e-98 362.8 234 78.2
Migut.K00777 Erythranthe guttata HOM05D005609 ORTHO05D006871 3.0e-98 362.5 242 77.3
PGR142G0047 Punica granatum HOM05D005609 ORTHO05D006871 8.6e-98 360.9 241 76.8
Haze_02915 Corylus avellana HOM05D005609 ORTHO05D006871 7.3e-97 357.8 263 72.6
Lj9A548T58 Lonicera japonica HOM05D005609 ORTHO05D006871 2.8e-96 355.9 264 70.8
Cpa.g.sc52.59 Carica papaya HOM05D005609 ORTHO05D006871 1.1e-95 354.0 272 70.6
CANSAT25G0413 Cannabis sativa HOM05D005609 ORTHO05D006871 4.0e-95 352.1 241 77.2
PSO017G2814 Papaver somniferum HOM05D005609 ORTHO05D006871 8.9e-95 350.9 238 74.8
Medtr7g450930 Medicago truncatula HOM05D005609 ORTHO05D006871 1.2e-94 350.5 239 74.5
ECA234G4049 Erigeron canadensis HOM05D005609 ORTHO05D006871 2.0e-94 349.7 237 75.9
HanXRQChr02g0046691 Helianthus annuus HOM05D005609 ORTHO05D006871 2.0e-94 349.7 235 77.4
PSO063G0967 Papaver somniferum HOM05D005609 ORTHO05D006871 7.5e-94 347.8 238 74.4
TPR.G20612 Trifolium pratense HOM05D005609 ORTHO05D006871 9.9e-94 347.4 239 74.1
Thecc.02G366200 Theobroma cacao HOM05D005609 ORTHO05D006871 2.2e-93 346.3 232 77.2
FAN10G3233 Fragaria x ananassa HOM05D005609 ORTHO05D006871 4.9e-93 345.1 235 75.7
FAN10G3950 Fragaria x ananassa HOM05D005609 ORTHO05D006871 2.4e-92 342.8 235 75.3
Atru.chr5.35 Acer truncatum HOM05D005609 ORTHO05D006871 4.1e-92 342.0 240 74.6
Glyma.08G340000 Glycine max HOM05D005609 ORTHO05D006871 5.4e-92 341.7 237 73.0
Sed0001863 Sechium edule HOM05D005609 ORTHO05D006871 7.1e-92 341.3 240 72.1
Lalb_Chr03g0040871 Lupinus albus HOM05D005609 ORTHO05D006871 1.6e-91 340.1 237 73.4
QL04p025874 Quercus lobata HOM05D005609 ORTHO05D006871 1.6e-91 340.1 332 58.4
Oeu021960.2 Olea europaea HOM05D005609 ORTHO05D006871 2.1e-91 339.7 272 65.8
Sc26g0001790 Simmondsia chinensis HOM05D005609 ORTHO05D006871 2.7e-91 339.3 237 73.8
Gohir.A09G169400 Gossypium hirsutum HOM05D005609 ORTHO05D006871 3.5e-91 339.0 250 71.2
THA.LOC104804469 Tarenaya hassleriana HOM05D005609 ORTHO05D006871 3.5e-91 339.0 239 74.5
unitig_26.g8865 Utricularia gibba HOM05D005609 ORTHO05D006871 1.0e-90 337.4 232 73.3
CsaV3_3G010350 Cucumis sativus L. HOM05D005609 ORTHO05D006871 1.3e-90 337.0 244 70.5
MELO3C006259.2 Cucumis melo HOM05D005609 ORTHO05D006871 1.7e-90 336.7 247 71.3
vmacro13537 Vaccinium macrocarpon HOM05D005609 ORTHO05D006871 2.3e-90 336.3 333 57.1
Gohir.D09G165100 Gossypium hirsutum HOM05D005609 ORTHO05D006871 3.0e-90 335.9 234 74.4
Lj1g0022406 Lotus japonicus HOM05D005609 ORTHO05D006871 3.0e-90 335.9 238 72.3
Gorai.006G186900 Gossypium raimondii HOM05D005609 ORTHO05D006871 5.1e-90 335.1 234 74.4
Phvul.008G139400 Phaseolus vulgaris HOM05D005609 ORTHO05D006871 8.6e-90 334.3 237 72.6
Ca_20451_v3 Cicer arietinum L. HOM05D005609 ORTHO05D006871 5.6e-89 331.6 235 73.2
arahy.Tifrunner.gnm1.ann1.R04L27 Arachis hypogaea HOM05D005609 ORTHO05D006871 1.6e-88 330.1 226 74.3
Thhalv10018566m.g Eutrema salsugineum HOM05D005609 ORTHO05D006871 3.6e-88 328.9 239 71.1
Ah.16g103320 Amaranthus hybridus HOM05D005609 ORTHO05D006871 4.7e-88 328.6 235 73.6
BcaB02g07248 Brassica carinata HOM05D000537 ORTHO05D006871 2.4e-87 326.2 243 70.0
AL2G40620 Arabidopsis lyrata HOM05D005609 ORTHO05D006871 3.1e-87 325.9 239 69.9
CARHR073710 Cardamine hirsuta HOM05D005609 ORTHO05D006871 5.2e-87 325.1 239 70.7
Carub.0002s0078 Capsella rubella HOM05D005609 ORTHO05D006871 1.5e-86 323.6 239 69.9
Sp5g34990 Schrenkiella parvula HOM05D005609 ORTHO05D006871 2.0e-86 323.2 239 70.7
BcaC08g45338 Brassica carinata HOM05D005609 ORTHO05D006871 3.4e-86 322.4 243 69.1
Aa31LG4G1030 Aethionema arabicum HOM05D005609 ORTHO05D006871 4.4e-86 322.0 239 69.9
CDE02G3958 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 5.8e-86 321.6 237 69.2
BcaC08g47546 Brassica carinata HOM05D005609 ORTHO05D006871 9.9e-86 320.9 239 70.3
Ciclev10020203m.g Citrus clementina HOM05D005609 ORTHO05D006871 9.9e-86 320.9 235 73.2
CDE11G0052 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 1.3e-85 320.5 230 70.9
A07p44900 Brassica napus HOM05D005609 ORTHO05D006871 2.2e-85 319.7 239 69.9
BolC6t40388H Brassica oleracea HOM05D005609 ORTHO05D006871 2.9e-85 319.3 235 71.1
C06p29500 Brassica napus HOM05D000537 ORTHO05D006871 4.9e-85 318.5 244 68.9
AT1G80770 Arabidopsis thaliana HOM05D005609 ORTHO05D006871 6.4e-85 318.2 234 70.5
A07p26850 Brassica napus HOM05D000537 ORTHO05D006871 8.4e-85 317.8 244 68.9
BraA07t31997Z Brassica rapa HOM05D005609 ORTHO05D006871 8.4e-85 317.8 240 70.4
BraA07t30328Z Brassica rapa HOM05D005609 ORTHO05D006871 2.4e-84 316.2 244 68.4
COL.COLO4_11253 Corchorus olitorius HOM05D005609 ORTHO05D006871 2.1e-83 313.2 259 68.0
arahy.Tifrunner.gnm1.ann1.HH0QF2 Arachis hypogaea HOM05D005609 ORTHO05D006871 2.7e-83 312.8 302 57.3
ClCG05G002820 Citrullus lanatus HOM05D005609 ORTHO05D006871 7.8e-83 311.2 227 69.2
BolC6t38114H Brassica oleracea HOM05D005609 ORTHO05D006871 1.7e-82 310.1 266 63.9
ATR0665G596 Amborella trichopoda HOM05D005609 ORTHO05D006871 3.9e-82 308.9 238 67.2
Atru.chr5.65 Acer truncatum HOM05D005609 ORTHO05D006871 1.9e-81 306.6 183 84.2
Aqoxy7G01889 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 1.8e-79 300.1 236 67.8
Psat3g155960 Pisum sativum HOM05D005609 ORTHO05D006871 6.4e-77 291.6 181 80.7
EL10Ac1g00709 Beta vulgaris HOM05D005609 ORTHO05D006871 2.1e-75 286.6 237 67.1
Os08g0158900 Oryza sativa ssp. japonica HOM05D005609 ORTHO05D006871 7.8e-75 284.6 204 69.6
Zm00001eb415700 Zea mays HOM05D005609 ORTHO05D006871 8.7e-74 281.2 220 66.4
Nn1g00634 Nelumbo nucifera HOM05D005609 ORTHO05D006871 4.3e-73 278.9 201 73.1
Mapoly0062s0042 Marchantia polymorpha HOM05D005609 ORTHO05D006871 3.1e-71 272.7 216 64.4
VMungo1080G1222 Vigna mungo HOM05D005609 ORTHO05D006871 1.9e-68 263.5 200 68.0
Pp3c1_10540 Physcomitrium patens HOM05D005609 ORTHO05D006871 1.8e-66 256.9 205 63.4
AUR62013794 Chenopodium quinoa HOM05D005609 ORTHO05D006871 1.3e-64 250.8 236 60.6
AagrBONN_evm.TU.Sc2ySwM_362.855 Anthoceros agrestis HOM05D005609 ORTHO05D006871 2.4e-63 246.5 191 67.0
PGSC0003DMG403017205 Solanum tuberosum HOM05D005609 ORTHO05D006871 6.9e-63 245.0 160 76.9
Aqoxy3G02539 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 5.8e-62 241.9 203 61.6
Dinv44009 Davidia involucrata HOM05D005609 ORTHO05D006871 2.2e-61 240.0 135 87.4
Duzib268G1371 Durio zibethinus HOM05D005609 ORTHO05D006871 3.8e-61 239.2 246 56.9
HPP92_008983 Vanilla planifolia HOM05D005609 ORTHO05D006871 8.4e-61 238.0 236 55.9
Hund17127 Selenicereus undatus HOM05D005609 ORTHO05D006871 1.2e-59 234.2 232 56.0
DCAR_029525 Daucus carota HOM05D005609 ORTHO05D006871 1.9e-57 226.9 157 72.0
SMO174G0003 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 9.6e-57 224.6 194 60.3
CBR_g3918 Chara braunii HOM05D005609 ORTHO05D006871 2.1e-56 223.4 191 60.2
SMO174G0269 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 1.2e-51 207.6 194 57.7
AUR62023361 Chenopodium quinoa HOM05D005609 ORTHO05D006871 5.1e-50 202.2 236 50.8
HPP92_027052 Vanilla planifolia HOM05D005609 ORTHO05D006871 3.2e-44 183.0 156 62.2
BcaC01g05159 Brassica carinata HOM05D005609 ORTHO05D006871 2.1e-43 180.3 122 73.0
BcaC01g03983 Brassica carinata HOM05D005609 ORTHO05D006871 2.9e-37 159.8 121 66.9
PRCOL_00000081 Prasinoderma coloniale HOM05D005609 ORTHO05D006871 1.9e-36 157.1 190 44.2
MCO05G391 Micromonas commoda HOM05D005609 ORTHO05D006871 3.5e-30 136.3 153 44.4
Cpa.g.c39652 Carica papaya HOM05D005609 ORTHO05D006871 2.1e-27 127.1 84 78.6
SEGI_20073 Sequoiadendron giganteum HOM05D005609 ORTHO05D006871 1.1e-25 121.3 80 75.0
Cre08.g384355 Chlamydomonas reinhardtii HOM05D005609 ORTHO05D006871 5.3e-15 85.9 106 42.5
Oeu044102.1 Olea europaea HOM05D005609 ORTHO05D006871 5.3e-15 85.9 64 68.8
Dinv44010 Davidia involucrata HOM05D005609 ORTHO05D006871 1.2e-14 84.7 86 58.1
FAN03G3361 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.1e-12 78.2 39 97.4
VMungo1080G0777 Vigna mungo HOM05D005609 ORTHO05D006871 1.4e-10 71.2 39 84.6
PGSC0003DMG402017205 Solanum tuberosum HOM05D005609 ORTHO05D006871 2.3e-10 70.5 34 97.1
DCAR_029526 Daucus carota HOM05D005609 ORTHO05D006871 3.0e-10 70.1 34 97.1
Nn6g33803 Nelumbo nucifera HOM05D005609 ORTHO05D006871 1.2e-09 68.2 75 56.0
Cpa.g.sc143.1 Carica papaya HOM05D005609 ORTHO05D006871 2.4e-07 60.5 34 82.4
Cpa.g.c36423 Carica papaya HOM05D005609 ORTHO05D006871 2.7e-06 57.0 42 69.0
Cpa.g.sc4360.1 Carica papaya HOM05D005609 ORTHO05D006871 2.7e-06 57.0 34 79.4
Cre10.g459500 Chlamydomonas reinhardtii HOM05D002502 ORTHO05D003592 4.5e-06 56.2 192 22.9


User provided reference genes

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