Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.7e-32 141.4 70 100.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.6e-27 124.8 67 88.1
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.4e-27 124.4 70 87.1
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.5e-27 124.0 67 88.1
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.5e-27 124.0 67 88.1
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 4.5e-27 124.0 67 88.1
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 7.7e-27 123.2 67 88.1
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 7.7e-27 123.2 70 85.7
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 1.3e-26 122.5 67 86.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.7e-26 122.1 70 80.0
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.7e-26 122.1 67 88.1
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 1.7e-26 122.1 70 84.3
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.7e-26 122.1 70 84.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.7e-26 122.1 67 88.1
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 2.2e-26 121.7 66 87.9
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 2.2e-26 121.7 67 86.6
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 2.2e-26 121.7 70 85.7
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.9e-26 121.3 70 81.4
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 2.9e-26 121.3 67 85.1
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 2.9e-26 121.3 67 86.6
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.9e-26 121.3 67 86.6
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.9e-26 121.3 67 86.6
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 2.9e-26 121.3 70 82.9
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 3.8e-26 120.9 67 85.1
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 3.8e-26 120.9 67 85.1
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 3.8e-26 120.9 66 86.4
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 3.8e-26 120.9 70 82.9
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.8e-26 120.9 67 86.6
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.8e-26 120.9 67 86.6
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 3.8e-26 120.9 70 80.0
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 5.0e-26 120.6 67 86.6
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 5.0e-26 120.6 70 84.3
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 5.0e-26 120.6 70 81.4
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.0e-26 120.6 67 86.6
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 6.5e-26 120.2 71 81.7
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 6.5e-26 120.2 67 86.6
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 8.5e-26 119.8 67 83.6
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 8.5e-26 119.8 70 81.4
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.1e-25 119.4 66 83.3
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.4e-25 119.0 66 84.8
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.4e-25 119.0 67 85.1
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 1.4e-25 119.0 70 84.3
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 1.4e-25 119.0 70 84.3
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.4e-25 119.0 70 81.4
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.9e-25 118.6 71 83.1
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 83.6
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.5e-25 118.2 70 81.4
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.5e-25 118.2 70 81.4
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 2.5e-25 118.2 66 86.4
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 3.2e-25 117.9 66 83.3
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 4.2e-25 117.5 66 83.3
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 4.2e-25 117.5 67 82.1
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 4.2e-25 117.5 67 83.6
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 4.2e-25 117.5 70 82.9
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 5.5e-25 117.1 67 83.6
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 5.5e-25 117.1 67 82.1
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 5.5e-25 117.1 66 83.3
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 7.2e-25 116.7 67 83.6
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 1.2e-24 115.9 66 83.3
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.2e-24 115.9 69 78.3
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.2e-24 115.9 67 83.6
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 80.6
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 82.1
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 77.6
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 2.7e-24 114.8 71 80.3
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.7e-24 114.8 66 80.3
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 2.7e-24 114.8 66 81.8
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 2.7e-24 114.8 65 83.1
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.7e-24 114.8 66 80.3
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 3.6e-24 114.4 70 77.1
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 3.6e-24 114.4 70 81.4
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 3.6e-24 114.4 67 79.1
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 4.7e-24 114.0 67 80.6
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 6.1e-24 113.6 65 78.5
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 6.1e-24 113.6 67 83.6
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 6.1e-24 113.6 67 79.1
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 7.9e-24 113.2 67 80.6
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 82.1
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.0e-23 112.8 69 75.4
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 1.0e-23 112.8 66 80.3
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.4e-23 112.5 66 80.3
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 79.1
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.4e-23 112.5 66 81.8
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.4e-23 112.5 66 78.8
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.8e-23 112.1 70 81.4
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.8e-23 112.1 66 78.8
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 2.3e-23 111.7 67 76.1
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 3.0e-23 111.3 68 76.5
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 3.0e-23 111.3 67 79.1
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.9e-23 110.9 67 79.1
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 3.9e-23 110.9 71 76.1
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.1e-23 110.5 70 74.3
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 81.8
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 78.8
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 80.3
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 6.7e-23 110.2 69 72.5
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.1e-22 109.4 66 72.7
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 1.1e-22 109.4 66 74.2
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 76.1
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 2.0e-22 108.6 70 74.3
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 77.6
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 2.6e-22 108.2 67 76.1
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 77.3
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 77.3
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 77.3
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 77.3
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 78.8
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 74.2
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 5.7e-22 107.1 67 76.1
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 5.7e-22 107.1 66 77.3
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 5.7e-22 107.1 66 75.8
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 7.4e-22 106.7 66 75.8
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 9.7e-22 106.3 67 74.6
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 9.7e-22 106.3 64 76.6
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 9.7e-22 106.3 66 77.3
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 9.7e-22 106.3 66 74.2
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.3e-21 105.9 67 80.6
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 1.3e-21 105.9 66 77.3
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.7e-21 105.5 66 75.8
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.7e-21 105.5 70 71.4
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 3.7e-21 104.4 66 75.8
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 3.7e-21 104.4 66 75.8
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 4.8e-21 104.0 66 74.2
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 6.3e-21 103.6 66 74.2
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 6.3e-21 103.6 66 74.2
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 6.3e-21 103.6 66 74.2
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 6.3e-21 103.6 67 73.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 8.2e-21 103.2 66 72.7
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.4e-20 102.4 66 71.2
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.4e-20 102.4 66 74.2
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.4e-20 102.4 67 71.6
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 1.8e-20 102.1 70 70.0
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 3.1e-20 101.3 67 74.6
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 3.1e-20 101.3 67 71.6
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 4.1e-20 100.9 66 72.7
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 5.9e-19 97.1 66 74.2
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 1.7e-18 95.5 49 93.9
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 6.5e-18 93.6 64 71.9
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.1e-17 92.8 50 88.0
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.2e-17 91.3 60 71.7
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 3.6e-16 87.8 51 82.4
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.4e-15 85.9 55 78.2
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 3.9e-15 84.3 50 78.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 8.8e-15 83.2 50 80.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 2.6e-14 81.6 50 78.0
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.3e-14 81.3 50 76.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 4.4e-14 80.9 60 70.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 7.4e-14 80.1 50 76.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 7.4e-14 80.1 50 76.0
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 1.3e-13 79.3 54 70.4
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.3e-13 77.0 51 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 1.8e-12 75.5 59 57.6
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.8e-12 75.5 60 65.0
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 5.3e-12 73.9 50 72.0
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 1.2e-11 72.8 55 70.9
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 1.7e-10 68.9 50 68.0
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 2.2e-10 68.6 46 71.7
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 1.9e-09 65.5 56 55.4
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 7.2e-09 63.5 47 66.0
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 3.0e-07 58.2 61 49.2
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 7.5e-06 53.5 33 72.7


User provided reference genes

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