Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041826 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.6e-244 849.0 432 100.0
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.5e-226 789.3 440 93.6
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 7.2e-168 594.3 408 76.0
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 4.4e-165 585.1 460 67.6
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 6.6e-153 544.7 445 63.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.7e-148 530.0 439 63.1
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.7e-148 528.9 435 63.4
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 8.3e-148 527.7 443 61.4
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 8.6e-145 517.7 451 60.5
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 2.1e-143 513.1 444 59.0
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 4.4e-141 505.4 472 58.7
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 4.9e-140 501.9 442 60.2
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 3.2e-139 499.2 431 60.1
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 4.6e-138 495.4 441 59.0
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 7.8e-138 494.6 445 58.7
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 6.6e-137 491.5 441 58.0
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.5e-136 489.6 444 57.9
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 1.6e-135 486.9 432 57.2
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 3.6e-135 485.7 443 56.9
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 6.8e-134 481.5 435 57.5
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 4.4e-133 478.8 418 57.2
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 4.9e-132 475.3 459 55.1
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.9e-131 473.4 418 56.9
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 7.8e-130 468.0 449 56.6
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 1.5e-128 463.8 426 56.1
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 2.8e-127 459.5 402 57.2
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 3.6e-127 459.1 443 55.5
Duzib187G0424 Durio zibethinus HOM05D002875 ORTHO05D003215 4.0e-126 455.7 395 59.7
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 2.6e-125 453.0 428 55.8
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 4.4e-125 452.2 429 55.5
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 4.9e-124 448.7 444 55.0
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 3.2e-123 446.0 444 51.1
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 3.4e-117 426.0 438 52.5
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 2.4e-115 419.9 425 53.2
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 2.1e-114 416.8 445 52.1
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 1.0e-113 414.5 438 51.6
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.0e-113 414.5 444 49.5
MBI07_g16947_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 1.2e-106 391.0 328 58.8
PSO017G1731 Papaver somniferum HOM05D002875 ORTHO05D003215 3.7e-103 379.4 372 51.9
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 2.3e-97 360.1 449 49.4
GSVIVG01033092001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.3e-81 307.0 310 54.8
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 3.8e-76 289.7 438 38.8
Actinidia30873 Actinidia chinensis HOM05D002875 ORTHO05D003215 6.5e-76 288.9 402 45.3
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 7.2e-75 285.4 429 39.9
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 7.2e-75 285.4 409 40.8
PSO017G4267 Papaver somniferum HOM05D002875 ORTHO05D003215 3.6e-74 283.1 304 48.7
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 8.0e-74 282.0 435 37.5
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 2.3e-73 280.4 435 37.7
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 2.3e-73 280.4 438 40.6
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 3.0e-73 280.0 435 40.2
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 3.9e-73 279.6 418 40.2
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 6.7e-73 278.9 438 37.0
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 1.1e-72 278.1 439 38.5
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.3e-71 274.6 433 37.2
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 1.7e-71 274.2 439 36.4
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 1.7e-71 274.2 418 38.3
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 1.7e-71 274.2 442 37.1
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 3.7e-71 273.1 438 39.3
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 1.4e-70 271.2 438 37.2
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.4e-70 271.2 418 36.4
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.4e-70 271.2 416 39.2
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.8e-70 270.8 445 37.1
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 3.1e-70 270.0 409 38.6
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 4.1e-70 269.6 414 37.9
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 7.0e-70 268.9 442 36.7
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 7.0e-70 268.9 438 37.0
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 7.0e-70 268.9 441 37.2
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 7.0e-70 268.9 438 37.0
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 9.1e-70 268.5 438 39.0
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 9.1e-70 268.5 435 38.6
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 1.2e-69 268.1 416 37.0
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.6e-69 267.7 438 39.0
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.6e-69 266.9 233 60.1
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.5e-69 266.5 405 39.3
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 3.5e-69 266.5 441 37.4
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.0e-68 265.0 443 38.4
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 1.0e-68 265.0 441 37.2
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.0e-68 265.0 375 41.3
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.3e-68 264.6 435 36.6
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.7e-68 264.2 439 36.2
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 3.8e-68 263.1 441 38.1
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 1.1e-67 261.5 442 37.1
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 1.1e-67 261.5 414 37.0
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 1.5e-67 261.2 418 38.5
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 2.5e-67 260.4 447 35.6
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 2.5e-67 260.4 421 36.6
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 4.2e-67 259.6 427 36.5
CAN.G1166.11 Capsicum annuum HOM05D002875 ORTHO05D003215 9.4e-67 258.5 437 35.5
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 9.4e-67 258.5 437 35.5
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 9.4e-67 258.5 442 37.3
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 1.6e-66 257.7 422 36.7
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.1e-66 257.3 430 35.3
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 3.6e-66 256.5 436 36.7
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 4.7e-66 256.1 440 35.5
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 1.0e-65 255.0 440 35.2
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 1.0e-65 255.0 446 36.5
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 1.0e-65 255.0 439 37.6
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 1.8e-65 254.2 411 36.5
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 1.8e-65 254.2 438 36.1
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 2.3e-65 253.8 436 34.6
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 2.3e-65 253.8 447 37.4
FAN08G3091 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.0e-65 253.4 398 35.7
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 4.0e-65 253.1 411 36.0
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 4.0e-65 253.1 444 35.4
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 6.8e-65 252.3 426 37.1
FAN18G3563 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.8e-65 252.3 395 36.2
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 8.8e-65 251.9 478 33.1
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 1.2e-64 251.5 418 36.6
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.5e-64 251.1 401 37.2
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 2.6e-64 250.4 440 34.3
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 3.4e-64 250.0 418 36.4
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 4.4e-64 249.6 417 35.5
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 4.4e-64 249.6 440 35.0
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 5.7e-64 249.2 441 34.5
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 7.5e-64 248.8 417 34.8
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 7.5e-64 248.8 433 34.6
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 1.7e-63 247.7 418 36.1
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 1.7e-63 247.7 418 35.6
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 1.7e-63 247.7 418 36.1
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 1.7e-63 247.7 418 35.9
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 6.3e-63 245.7 418 35.4
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 5.4e-62 242.7 445 34.8
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 7.0e-62 242.3 411 36.5
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 1.2e-61 241.5 447 34.7
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 2.0e-61 240.7 418 34.7
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.5e-61 240.0 433 34.2
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 3.5e-61 240.0 423 34.3
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 3.5e-61 240.0 447 35.6
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 4.5e-61 239.6 434 33.6
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 7.7e-61 238.8 418 35.2
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 7.7e-61 238.8 444 33.8
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 1.3e-60 238.0 440 35.0
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 1.3e-60 238.0 418 35.2
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 2.2e-60 237.3 439 34.2
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 2.9e-60 236.9 416 34.6
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 2.5e-59 233.8 436 33.9
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 2.1e-58 230.7 447 35.8
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 3.6e-58 229.9 439 35.8
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 1.5e-56 224.6 203 58.1
Hma1.2p1_0046F.1_g026650 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 4.4e-56 223.0 289 40.1
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.3e-55 219.2 426 33.1
Cpa.g.sc171.14 Carica papaya HOM05D002875 ORTHO05D003215 4.1e-54 216.5 266 46.2
QL10p008975 Quercus lobata HOM05D002875 ORTHO05D003215 2.0e-53 214.2 471 35.0
QL10p010243 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-52 211.5 474 33.8
SMO351G0397 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 1.3e-52 211.5 315 37.1
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 1.7e-52 211.1 407 33.2
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 3.8e-52 209.9 452 33.4
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 2.5e-51 207.2 473 33.8
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 4.2e-51 206.5 467 34.5
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 9.5e-51 205.3 473 33.8
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-50 204.9 461 33.2
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 3.6e-50 203.4 394 33.2
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 7.5e-48 195.7 469 32.2
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 4.9e-47 193.0 230 44.3
QL10p009910 Quercus lobata HOM05D002875 ORTHO05D003215 4.1e-46 189.9 439 31.9
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 7.0e-46 189.1 320 35.3
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 1.6e-45 188.0 483 30.4
Ah.11g051480 Amaranthus hybridus HOM05D002875 ORTHO05D003215 2.7e-45 187.2 404 33.4
QL10p010118 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-45 187.2 483 30.2
QL10p010194 Quercus lobata HOM05D002875 ORTHO05D003215 3.5e-45 186.8 469 31.3
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 5.9e-45 186.0 282 37.6
SMO367G0458 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 2.9e-44 183.7 317 35.0
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 1.1e-43 181.8 280 38.6
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 9.5e-43 178.7 230 43.5
QL10p009307 Quercus lobata HOM05D002875 ORTHO05D003215 3.4e-40 170.2 447 30.4
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 5.4e-38 162.9 430 28.8
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-34 151.8 345 29.0
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 4.7e-34 149.8 189 41.8
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 1.2e-32 145.2 285 30.9
QL10p009146 Quercus lobata HOM05D002875 ORTHO05D003215 5.8e-32 142.9 383 30.3
vmacro18345 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 1.9e-30 137.9 112 66.1
arahy.Tifrunner.gnm1.ann1.2000FW Arachis hypogaea HOM05D002875 ORTHO05D003215 1.7e-28 131.3 140 52.9
QL10p010149 Quercus lobata HOM05D002875 ORTHO05D003215 1.1e-27 128.6 276 33.0
SEGI_10049 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 1.6e-26 124.8 166 41.0
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 1.4e-22 111.7 217 34.1
SEGI_02753 Sequoiadendron giganteum HOM05D009476 ORTHO05D014262 2.1e-21 107.8 137 38.0
COL.COLO4_30079 Corchorus olitorius HOM05D002875 ORTHO05D003215 2.3e-20 104.4 131 45.8
QL10p009343 Quercus lobata HOM05D002875 ORTHO05D003215 4.3e-19 100.1 252 32.1
TPR.G14262 Trifolium pratense HOM05D002875 ORTHO05D003215 2.4e-17 94.4 240 28.8
Lj5A126T83 Lonicera japonica HOM05D002875 ORTHO05D003215 4.0e-17 93.6 180 30.6
QL10p009356 Quercus lobata HOM05D002875 ORTHO05D003215 2.0e-16 91.3 206 31.1
AagrBONN_evm.TU.Sc2ySwM_228.3556 Anthoceros agrestis HOM05D002875 ORTHO05D003215 2.2e-15 87.8 149 35.6
Atru.chr9.2509 Acer truncatum HOM05D002875 ORTHO05D003215 1.1e-14 85.5 237 29.5
QL10p009041 Quercus lobata HOM05D002875 ORTHO05D003215 4.2e-14 83.6 216 33.3
SEGI_01143 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 6.0e-13 79.7 91 47.3
vmacro18346 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 2.2e-07 61.2 38 78.9
Sabra14G0002000 Salix brachista HOM05D002875 ORTHO05D003215 8.4e-07 59.3 79 38.0


User provided reference genes

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