Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041814 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.0e-81 306.6 148 100.0
CSS0008916 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.0e-68 263.5 148 88.5
Manes.01G070800 Manihot esculenta HOM05D000375 ORTHO05D000240 3.0e-20 102.4 128 49.2
Thecc.03G265600 Theobroma cacao HOM05D000375 ORTHO05D000240 1.5e-19 100.1 119 51.3
Rhsim07G0097500 Rhododendron simsii HOM05D000375 ORTHO05D000224 2.5e-19 99.4 68 70.6
Rhsim07G0098600 Rhododendron simsii HOM05D000375 ORTHO05D000224 2.5e-19 99.4 68 70.6
vmacro14026 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 3.3e-19 99.0 75 65.3
Gohir.D12G225800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.8e-18 95.9 113 50.4
Gohir.A12G223200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.7e-18 95.1 113 49.6
Potri.003G118100 Populus trichocarpa HOM05D000375 ORTHO05D000240 4.7e-18 95.1 139 46.8
Gohir.A08G175500 Gossypium hirsutum HOM05D000375 ORTHO05D000240 8.1e-18 94.4 133 47.4
Duzib084G0039 Durio zibethinus HOM05D000375 ORTHO05D000240 1.8e-17 93.2 123 49.6
GSVIVG01019913001 Vitis vinifera HOM05D000375 ORTHO05D000240 1.8e-17 93.2 118 48.3
Manes.02G029175 Manihot esculenta HOM05D000375 ORTHO05D000240 3.1e-17 92.4 124 47.6
Gorai.008G241800 Gossypium raimondii HOM05D000375 ORTHO05D000240 4.0e-17 92.0 131 43.5
Gorai.004G204600 Gossypium raimondii HOM05D000375 ORTHO05D000240 5.2e-17 91.7 133 48.1
Duzib068G1297 Durio zibethinus HOM05D000375 ORTHO05D000240 6.8e-17 91.3 124 49.2
Gohir.D08G194200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 8.9e-17 90.9 95 53.7
Potri.001G114000 Populus trichocarpa HOM05D000375 ORTHO05D000240 3.4e-16 89.0 105 50.5
Sabra01G0087200 Salix brachista HOM05D000375 ORTHO05D000240 3.4e-16 89.0 114 48.2
TAR629G2759 Trochodendron aralioides HOM05D000375 ORTHO05D000240 3.4e-16 89.0 118 47.5
COL.COLO4_23825 Corchorus olitorius HOM05D000375 ORTHO05D000240 6.4e-15 84.7 111 46.8
QL12p015939 Quercus lobata HOM05D000375 ORTHO05D000240 1.1e-14 84.0 113 46.9
Aqoxy7G00563 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 1.4e-14 83.6 104 50.0
Ciclev10022033m.g Citrus clementina HOM05D000375 ORTHO05D000240 3.2e-14 82.4 118 46.6
TWI15G0030 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 5.4e-14 81.6 118 43.2
Sabra03G0082200 Salix brachista HOM05D000375 ORTHO05D000240 7.1e-14 81.3 121 44.6
CANSAT21G1434 Cannabis sativa HOM05D000375 ORTHO05D000240 2.7e-13 79.3 70 60.0
Dinv39048 Davidia involucrata HOM05D000375 ORTHO05D000240 1.7e-12 76.6 72 56.9
Duzib205G0951 Durio zibethinus HOM05D000375 ORTHO05D000240 1.7e-12 76.6 81 53.1
CiPaw.11G144300 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.3e-12 76.3 84 48.8
TAR636G0954 Trochodendron aralioides HOM05D000375 ORTHO05D000240 5.1e-12 75.1 118 43.2
CDE12G0876 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 8.6e-12 74.3 84 56.0
Nn4g26450 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.1e-11 73.9 118 43.2
Peaxi162Scf00620g00027 Petunia axillaris HOM05D000375 ORTHO05D000240 1.1e-11 73.9 103 43.7
Haze_09014 Corylus avellana HOM05D000375 ORTHO05D000240 1.9e-11 73.2 114 44.7
PSO782G4546 Papaver somniferum HOM05D000375 ORTHO05D000240 2.8e-10 69.3 68 55.9
MSTRG.23649 Avicennia marina HOM05D000375 ORTHO05D000240 4.7e-10 68.6 42 71.4
Cfa012051 Carpinus fangiana HOM05D000375 ORTHO05D000240 8.1e-10 67.8 70 54.3
Nitab4.5_0005167g0090 Nicotiana tabacum HOM05D000375 ORTHO05D000240 8.1e-10 67.8 66 53.0
Atru.chr9.1484 Acer truncatum HOM05D000375 ORTHO05D000240 1.1e-09 67.4 58 58.6
PSO478G5241 Papaver somniferum HOM05D000375 ORTHO05D000240 1.4e-09 67.0 112 42.0
CAN.G630.25 Capsicum annuum HOM05D000375 ORTHO05D000240 1.8e-09 66.6 60 58.3
MBI12_g34484_MAGBIO Magnolia biondii HOM05D000375 ORTHO05D000240 1.8e-09 66.6 84 48.8
Sopen08g028160 Solanum pennellii HOM05D000375 ORTHO05D000240 1.8e-09 66.6 68 52.9
HPP92_022248 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.8e-09 66.6 69 56.5
FvH4_7g12130 Fragaria vesca HOM05D000375 ORTHO05D000240 2.4e-09 66.2 81 49.4
FAN06G0710 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.4e-09 66.2 81 49.4
FAN06G1751 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.4e-09 66.2 81 49.4
FAN10G2530 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.4e-09 66.2 81 49.4
Thecc.01G373900 Theobroma cacao HOM05D000375 ORTHO05D000240 4.0e-09 65.5 105 40.0
Solyc08g079800.4 Solanum lycopersicum HOM05D000375 ORTHO05D000240 5.2e-09 65.1 46 65.2
RcHm_v2.0_Chr1g0350881 Rosa chinensis HOM05D000375 ORTHO05D000240 6.8e-09 64.7 84 47.6
CsaV3_3G009530 Cucumis sativus L. HOM05D000375 ORTHO05D000240 8.9e-09 64.3 85 45.9
Dinv43727 Davidia involucrata HOM05D000375 ORTHO05D000240 8.9e-09 64.3 83 49.4
ClCG05G002090 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.2e-08 63.9 85 48.2
HanXRQChr02g0047741 Helianthus annuus HOM05D000375 ORTHO05D000240 1.2e-08 63.9 57 52.6
ECA233G1410 Erigeron canadensis HOM05D000375 ORTHO05D000240 1.5e-08 63.5 45 62.2
MELO3C006174.2 Cucumis melo HOM05D000375 ORTHO05D000240 3.4e-08 62.4 90 43.3
Nitab4.5_0010186g0040 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.4e-08 62.4 64 48.4
Prupe.2G148100 Prunus persica HOM05D000375 ORTHO05D000240 3.4e-08 62.4 52 59.6
Hma1.2p1_0033F.1_g020990 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 5.8e-08 61.6 83 47.0
Lsat_1_v5_gn_6_10680 Lactuca sativa HOM05D000375 ORTHO05D000240 5.8e-08 61.6 63 47.6
Sed0024415 Sechium edule HOM05D000375 ORTHO05D000240 5.8e-08 61.6 76 48.7
Potri.014G071800 Populus trichocarpa HOM05D000375 ORTHO05D000240 9.9e-08 60.8 84 42.9
Duzib138G0642 Durio zibethinus HOM05D000375 ORTHO05D000240 1.7e-07 60.1 83 41.0
FAN01G1328 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.9e-07 59.3 91 42.9
MD02G1201000 Malus domestica HOM05D000375 ORTHO05D000240 2.9e-07 59.3 54 50.0
Os04g0574500 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 2.9e-07 59.3 40 70.0
FAN03G0859 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.9e-07 58.5 67 50.7
FAN10G3750 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.9e-07 58.5 58 53.4
Sed0013097 Sechium edule HOM05D000375 ORTHO05D000240 4.9e-07 58.5 99 38.4
A04p33870 Brassica napus HOM05D000375 ORTHO05D000240 6.4e-07 58.2 49 55.1
BraA04t18847Z Brassica rapa HOM05D000375 ORTHO05D000240 6.4e-07 58.2 49 55.1
Zm00001eb250620 Zea mays HOM05D000375 ORTHO05D000240 6.4e-07 58.2 42 64.3
Gorai.007G092400 Gossypium raimondii HOM05D000375 ORTHO05D000240 8.4e-07 57.8 82 40.2
SalBow8G5453 Salvia bowleyana HOM05D000375 ORTHO05D000240 1.1e-06 57.4 69 47.8
Actinidia31428 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.4e-06 57.0 89 41.6
DCAR_006786 Daucus carota HOM05D000375 ORTHO05D000240 1.4e-06 57.0 70 44.3
CiPaw.01G260300 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.4e-06 56.2 69 44.9
Os02g0678800 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 2.4e-06 56.2 41 63.4
BcaC02g07088 Brassica carinata HOM05D000375 ORTHO05D000240 3.2e-06 55.8 49 53.1
C04p71600 Brassica napus HOM05D000375 ORTHO05D000240 3.2e-06 55.8 49 53.1
Haze_16837 Corylus avellana HOM05D000375 ORTHO05D000240 3.2e-06 55.8 74 43.2
Gohir.A11G081800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 3.2e-06 55.8 80 38.8
ATR0757G059 Amborella trichopoda HOM05D000375 ORTHO05D000240 4.2e-06 55.5 36 72.2
Gohir.D11G086500 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.2e-06 55.5 82 39.0
MSTRG.11890 Avicennia marina HOM05D000375 ORTHO05D000240 5.4e-06 55.1 73 43.8
Cfa001697 Carpinus fangiana HOM05D000375 ORTHO05D000240 5.4e-06 55.1 74 43.2
Os07g0467500 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 5.4e-06 55.1 41 58.5
Sabra14G0051000 Salix brachista HOM05D000375 ORTHO05D000240 5.4e-06 55.1 83 43.4
Zm00001eb104790 Zea mays HOM05D000375 ORTHO05D000240 7.1e-06 54.7 41 56.1
Zm00001eb320200 Zea mays HOM05D000375 ORTHO05D000240 7.1e-06 54.7 41 56.1
BcaB06g29421 Brassica carinata HOM05D000375 ORTHO05D000240 9.2e-06 54.3 62 46.8
Thhalv10001460m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 9.2e-06 54.3 48 58.3
TWI59G1007 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 9.2e-06 54.3 51 49.0


User provided reference genes

Program Settings