Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 9.9e-254 879.8 470 100.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.2e-252 874.8 472 99.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 9.7e-185 650.6 468 72.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.0e-181 640.6 462 71.6
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.8e-176 621.7 462 68.4
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.9e-160 569.3 534 59.4
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.6e-158 562.0 479 64.3
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.3e-156 555.4 473 64.3
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 7.3e-156 554.7 477 59.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.1e-154 549.3 474 60.3
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.2e-154 548.5 475 60.4
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.2e-153 547.4 466 60.9
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 3.7e-152 542.3 466 60.1
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 6.4e-152 541.6 469 60.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 9.2e-151 537.7 469 59.3
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.7e-150 536.2 477 59.5
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.5e-150 535.8 466 59.7
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.6e-150 535.4 468 59.4
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 7.8e-150 534.6 475 60.2
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.7e-149 533.5 469 61.8
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 3.0e-149 532.7 477 59.3
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.5e-148 530.4 467 58.0
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.5e-148 529.6 465 58.7
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.7e-147 525.4 600 52.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.2e-147 525.0 466 58.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.2e-145 520.8 466 58.4
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.0e-145 520.0 463 58.1
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 2.6e-145 519.6 465 57.8
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 5.8e-145 518.5 465 58.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.7e-144 516.9 482 55.6
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 7.1e-143 511.5 470 60.2
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.1e-142 510.0 465 57.0
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.7e-141 506.9 452 58.4
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.5e-140 503.1 461 56.8
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 9.5e-140 501.1 468 58.3
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.1e-139 500.0 472 57.6
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 4.7e-139 498.8 464 58.0
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.4e-138 497.3 465 55.7
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 4.0e-138 495.7 465 55.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 8.9e-138 494.6 472 54.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 8.9e-138 494.6 467 54.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.9e-138 494.6 467 56.3
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.6e-137 491.5 472 56.6
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 8.4e-136 488.0 465 55.1
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.4e-135 487.3 468 54.7
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.9e-135 486.9 463 57.2
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 5.4e-135 485.3 455 57.6
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 7.1e-135 485.0 488 52.5
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.2e-134 484.2 339 71.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 2.1e-134 483.4 459 57.1
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 3.5e-134 482.6 458 56.8
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 3.5e-134 482.6 469 53.7
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.8e-134 481.5 469 55.2
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 7.8e-134 481.5 458 55.2
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.0e-133 481.1 480 52.7
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.0e-133 481.1 472 55.5
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.3e-133 480.7 472 55.9
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-133 479.9 458 57.0
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-133 479.6 465 53.8
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 5.1e-133 478.8 465 54.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.1e-133 478.8 465 53.8
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 8.7e-133 478.0 449 55.2
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-132 477.6 460 54.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-132 477.2 465 53.5
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.9e-132 476.9 449 55.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 4.7e-131 472.2 439 54.9
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-130 471.1 465 52.9
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.4e-130 469.9 464 53.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.1e-130 469.5 464 53.0
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.4e-129 466.1 460 52.4
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 9.9e-129 464.5 471 52.0
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.9e-129 464.5 460 52.2
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.7e-128 463.8 470 54.3
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.7e-128 463.8 464 52.6
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-127 460.7 460 51.7
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.4e-127 458.8 464 52.4
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 7.1e-127 458.4 468 51.7
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 7.1e-127 458.4 486 55.3
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.3e-127 458.0 427 57.1
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.6e-126 457.2 473 53.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.1e-126 456.8 467 53.3
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.1e-126 456.8 468 54.1
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.0e-125 454.5 458 52.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-125 453.0 466 52.4
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.9e-125 452.6 464 52.8
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 3.9e-125 452.6 469 52.2
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.1e-124 451.1 464 51.9
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.5e-124 449.9 600 42.7
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.8e-123 446.4 453 54.3
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 2.2e-120 436.8 466 51.9
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.9e-120 435.6 469 52.0
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.4e-119 434.1 469 52.2
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.4e-119 433.3 469 51.8
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.4e-119 433.3 468 51.1
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 7.9e-118 428.3 473 54.3
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.4e-114 417.5 448 50.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 9.0e-114 414.8 466 48.5
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.8e-112 409.5 415 53.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 6.4e-112 408.7 437 53.1
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.4e-111 407.5 469 49.7
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 4.6e-110 402.5 468 46.8
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 7.9e-110 401.7 450 52.7
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.8e-109 400.6 466 50.0
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.5e-108 396.7 460 50.9
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.5e-108 396.7 377 55.7
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 5.6e-108 395.6 466 49.4
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 3.7e-107 392.9 459 46.8
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.8e-106 390.6 459 48.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 7.6e-105 385.2 467 44.8
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.9e-104 383.3 469 48.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 3.2e-103 379.8 466 45.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.1e-98 362.8 296 60.8
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-97 360.5 302 59.9
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.0e-96 358.2 267 64.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-95 353.6 300 59.3
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-95 353.6 300 59.3
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-92 344.7 441 44.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-89 334.3 357 54.3
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.6e-89 333.6 262 64.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 3.4e-89 333.2 264 64.4
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 9.7e-84 315.1 458 42.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.5e-81 306.6 459 39.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 5.7e-76 289.3 440 39.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 5.0e-72 276.2 431 40.6
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.0e-69 266.5 454 38.5
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 2.8e-54 217.2 221 52.9
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.7e-54 216.5 136 77.2
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 2.3e-53 214.2 221 52.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.6e-49 201.4 464 35.8
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.9e-49 199.5 463 31.1
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 2.3e-48 197.6 477 33.1
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.6e-48 195.7 215 44.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 6.1e-46 189.5 482 31.1
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.3e-45 187.6 251 42.2
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 8.9e-45 185.7 329 38.0
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.9e-45 185.7 232 47.4
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.4e-44 183.3 325 38.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 8.0e-38 162.5 159 59.1
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 8.6e-32 142.5 155 51.0
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 8.6e-32 142.5 155 51.0
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.5e-31 141.7 467 26.6
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.9e-29 132.5 233 34.3
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-28 131.7 106 58.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.3e-27 128.6 233 46.8
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 6.4e-27 126.3 168 44.6
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-26 125.6 76 72.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.1e-26 125.6 449 28.3
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.8e-25 119.4 165 46.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-22 112.1 168 51.2
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-22 111.3 159 46.5
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.1e-22 109.4 99 55.6
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.8e-21 108.2 181 32.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.8e-21 106.3 139 48.2
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 7.6e-20 102.8 244 29.5
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.2e-18 97.4 251 29.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.1e-13 82.4 119 37.0
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.0e-13 79.3 67 61.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-12 77.4 67 59.7
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.6e-12 76.3 67 58.2
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.9e-12 75.9 66 60.6
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 3.2e-10 70.9 65 50.8


User provided reference genes

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