Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 4.8e-291 1003.8 521 100.0
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.2e-238 829.7 540 83.0
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.8e-221 772.7 539 75.5
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.9e-219 765.4 537 74.3
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 9.9e-212 740.3 538 73.0
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.7e-208 729.6 537 71.3
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 5.1e-208 728.0 537 70.8
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 1.1e-207 726.9 539 70.3
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 3.3e-207 725.3 539 70.1
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 4.7e-206 721.5 530 70.0
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 4.4e-204 714.9 515 73.8
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 5.8e-204 714.5 528 69.5
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 7.6e-204 714.1 518 72.2
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 2.2e-203 712.6 539 68.8
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 6.4e-203 711.1 524 70.6
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 1.1e-202 710.3 518 70.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.2e-202 708.8 535 70.7
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 4.2e-202 708.4 524 70.2
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 7.1e-202 707.6 542 71.2
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 3.5e-201 705.3 525 70.9
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 3.5e-201 705.3 536 68.7
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 6.0e-201 704.5 539 67.9
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.0e-200 703.7 526 69.4
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.7e-200 703.0 539 67.9
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 3.0e-200 702.2 528 68.2
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 3.9e-200 701.8 526 69.0
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 5.1e-200 701.4 528 68.6
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.5e-199 699.1 516 70.2
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 2.5e-199 699.1 515 70.3
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 2.8e-198 695.7 542 70.1
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 3.6e-198 695.3 539 67.3
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 6.2e-198 694.5 495 78.8
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 1.8e-197 693.0 543 66.3
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 5.3e-197 691.4 539 66.8
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 1.2e-196 690.3 574 66.4
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 2.0e-196 689.5 522 69.9
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 4.4e-196 688.3 515 69.3
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 9.9e-196 687.2 523 68.8
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.3e-195 686.8 539 68.1
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.7e-195 686.4 521 68.3
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.7e-195 686.4 514 69.5
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 2.9e-195 685.6 451 77.2
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 5.4e-194 681.4 540 65.7
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.1e-193 679.5 539 66.0
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 7.8e-193 677.6 537 66.9
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 2.3e-192 676.0 534 67.2
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.0e-192 675.6 529 65.6
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 5.1e-192 674.9 534 65.5
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 6.6e-192 674.5 522 68.8
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.5e-191 673.3 540 66.7
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 2.5e-191 672.5 523 68.3
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 6.4e-187 657.9 534 64.6
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 1.1e-186 657.1 534 63.7
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 3.2e-186 655.6 525 65.9
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.5e-185 652.1 522 64.6
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.8e-184 649.8 516 64.9
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.9e-184 648.7 521 64.5
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 3.9e-184 648.7 588 63.1
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 6.7e-184 647.9 517 65.4
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 2.5e-183 646.0 537 64.1
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 3.3e-183 645.6 518 66.6
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 3.3e-183 645.6 539 63.1
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 7.4e-183 644.4 544 63.6
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 1.3e-182 643.7 537 63.7
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 1.3e-182 643.7 540 63.7
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.8e-182 642.5 541 63.4
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 1.4e-181 640.2 539 62.3
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 1.8e-181 639.8 523 65.8
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.0e-181 638.6 541 63.2
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 6.9e-181 637.9 524 63.5
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 6.9e-181 637.9 542 63.3
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 1.2e-180 637.1 539 63.1
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 1.5e-180 636.7 545 63.9
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 2.0e-180 636.3 539 62.5
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 2.6e-180 636.0 531 63.1
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 4.5e-180 635.2 536 63.2
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 9.9e-180 634.0 587 58.1
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.7e-179 633.3 537 63.1
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 2.2e-179 632.9 573 60.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 2.2e-179 632.9 537 62.9
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 3.8e-179 632.1 532 62.8
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.8e-179 632.1 535 65.0
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 4.9e-179 631.7 534 62.5
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.4e-178 630.2 528 62.5
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 4.2e-178 628.6 494 66.2
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 7.9e-177 624.4 540 63.0
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.0e-176 624.0 538 62.1
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 3.0e-176 622.5 616 56.8
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 3.0e-176 622.5 520 61.7
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 6.7e-176 621.3 540 62.4
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 1.9e-175 619.8 570 59.6
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 1.6e-174 616.7 540 61.9
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 1.4e-173 613.6 534 61.2
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 2.4e-173 612.8 520 61.2
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 1.3e-171 607.1 541 61.0
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.2e-171 606.3 541 59.5
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 4.9e-171 605.1 516 63.0
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 1.4e-170 603.6 451 67.0
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 6.1e-169 598.2 529 61.1
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 6.1e-169 598.2 539 60.3
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.0e-168 597.4 435 72.0
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.3e-163 580.5 506 61.1
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.9e-163 579.3 541 59.3
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 2.1e-161 573.2 506 61.1
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.4e-160 570.5 536 57.3
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 1.4e-160 570.5 514 59.7
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 2.2e-158 563.1 495 59.6
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 1.1e-154 550.8 509 56.8
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 1.9e-154 550.1 575 53.2
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 3.6e-145 519.2 525 53.7
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 9.1e-141 504.6 476 59.7
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 8.5e-139 498.0 410 63.4
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 5.3e-133 478.8 483 55.9
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 7.2e-130 468.4 433 58.7
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 8.0e-129 464.9 511 53.4
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 6.8e-120 435.3 479 50.1
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.2e-119 434.5 508 47.0
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 3.4e-119 433.0 519 46.8
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 4.3e-114 416.0 498 45.2
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 6.6e-107 392.1 522 41.8
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 5.6e-106 389.0 517 47.0
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 3.6e-105 386.3 452 46.5
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 6.4e-102 375.6 486 42.0
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.1e-101 374.8 310 63.9
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 6.6e-99 365.5 326 60.1
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 3.6e-97 359.8 449 51.9
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 8.1e-97 358.6 475 42.1
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 6.8e-88 328.9 272 65.4
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.2e-84 318.2 359 48.5
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 4.6e-84 316.2 336 53.9
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 2.3e-83 313.9 266 63.9
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 8.4e-62 242.3 529 33.6
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.3e-46 191.8 105 88.6
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.0e-27 129.0 75 86.7
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 4.5e-23 113.6 145 48.3
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 4.0e-19 100.5 70 74.3
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 6.8e-19 99.8 126 55.6
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 4.4e-18 97.1 86 57.0
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 1.7e-17 95.1 56 85.7
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 1.5e-13 82.0 63 58.7
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 6.1e-12 76.6 66 56.1
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 1.4e-08 65.5 57 54.4
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 1.8e-08 65.1 49 61.2
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 1.8e-08 65.1 70 48.6
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 2.4e-08 64.7 214 23.8
RcHm_v2.0_Chr1g0336791 Rosa chinensis HOM05D005033 ORTHO05D036613 2.7e-07 61.2 34 79.4
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 1.7e-06 58.5 117 28.2
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 2.9e-06 57.8 102 30.4
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 2.9e-06 57.8 102 30.4
RcHm_v2.0_Chr4g0414881 Rosa chinensis HOM05D005033 ORTHO05D036613 2.9e-06 57.8 32 78.1
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 3.8e-06 57.4 101 34.7


User provided reference genes

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