Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041765 Camellia sinensis var. sinensis HOM05D008234 ORTHO05D010422 1.2e-183 646.7 423 100.0
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 2.6e-114 416.4 432 56.5
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 1.2e-106 391.0 432 52.1
QL12p026340 Quercus lobata HOM05D008234 ORTHO05D010422 6.6e-89 332.0 431 57.3
Aqoxy7G03839 Aquilegia oxysepala HOM05D008234 ORTHO05D010422 1.0e-81 308.1 400 54.2
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 5.0e-81 305.8 388 49.2
RcHm_v2.0_Chr6g0305711 Rosa chinensis HOM05D008234 ORTHO05D010422 4.0e-78 296.2 387 53.7
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 4.4e-77 292.7 433 51.3
CiPaw.08G023300 Carya illinoinensis HOM05D008234 ORTHO05D010422 7.5e-77 292.0 381 56.2
MSTRG.25893 Avicennia marina HOM05D008234 ORTHO05D010422 1.3e-76 291.2 398 42.7
TAR626G1903 Trochodendron aralioides HOM05D008234 ORTHO05D010422 4.9e-76 289.3 395 48.6
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 6.4e-76 288.9 333 46.8
Cc08_g08970 Coffea canephora HOM05D008234 ORTHO05D010422 8.3e-76 288.5 388 51.5
MD08G1118800 Malus domestica HOM05D008234 ORTHO05D010422 1.3e-73 281.2 431 57.1
Hund19548 Selenicereus undatus HOM05D008234 ORTHO05D010422 1.7e-73 280.8 431 49.7
Lj1g0008618 Lotus japonicus HOM05D008234 ORTHO05D010422 2.3e-73 280.4 394 40.9
SGA_v2.0_scaffold185G40113 Striga asiatica HOM05D008234 ORTHO05D010422 5.1e-73 279.3 395 40.5
Hma1.2p1_1255F.1_g270650 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 4.7e-71 272.7 331 45.6
Manes.03G062500 Manihot esculenta HOM05D008234 ORTHO05D010422 6.2e-71 272.3 388 53.6
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 1.5e-69 267.7 358 43.9
Migut.A00244 Erythranthe guttata HOM05D008234 ORTHO05D010422 2.0e-69 267.3 393 41.5
Ca_12814_v3 Cicer arietinum L. HOM05D008234 ORTHO05D010422 2.9e-68 263.5 412 39.3
FvH4_2g36160 Fragaria vesca HOM05D008234 ORTHO05D010422 4.9e-68 262.7 346 61.8
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 8.3e-68 261.9 374 39.8
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 4.1e-67 259.6 387 52.7
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 9.2e-67 258.5 386 39.6
SalBow4G0332 Salvia bowleyana HOM05D008234 ORTHO05D010422 2.1e-66 257.3 391 39.6
Medtr1g008360 Medicago truncatula HOM05D008234 ORTHO05D010422 2.7e-66 256.9 390 53.3
FAN20G2600 Fragaria x ananassa HOM05D008234 ORTHO05D010422 7.8e-66 255.4 338 43.8
Ah.16g105160 Amaranthus hybridus HOM05D008234 ORTHO05D010422 2.3e-65 253.8 391 38.6
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 7.3e-64 248.8 322 62.1
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 9.5e-64 248.4 382 39.0
Glyma.14G141400 Glycine max HOM05D008234 ORTHO05D010422 1.2e-63 248.1 387 48.3
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 4.7e-63 246.1 385 37.7
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 1.8e-62 244.2 431 50.1
FAN15G0125 Fragaria x ananassa HOM05D008234 ORTHO05D010422 4.0e-62 243.0 347 56.8
AUR62023021 Chenopodium quinoa HOM05D008234 ORTHO05D010422 5.8e-61 239.2 414 43.0
Ciclev10008407m.g Citrus clementina HOM05D008234 ORTHO05D010422 1.2e-58 231.5 436 48.9
Thecc.03G110200 Theobroma cacao HOM05D008234 ORTHO05D010422 7.8e-58 228.8 421 48.2
EL10Ac2g04079 Beta vulgaris HOM05D008234 ORTHO05D010422 2.5e-56 223.8 412 47.6
Gohir.A03G071900 Gossypium hirsutum HOM05D008234 ORTHO05D010422 2.5e-56 223.8 322 55.0
Haze_21845 Corylus avellana HOM05D008234 ORTHO05D010422 3.3e-56 223.4 322 60.6
Duzib068G0878 Durio zibethinus HOM05D008234 ORTHO05D010422 4.3e-56 223.0 434 48.4
Phvul.001G078800 Phaseolus vulgaris HOM05D008234 ORTHO05D010422 4.0e-54 216.5 407 45.2
Psat6g034200 Pisum sativum HOM05D008234 ORTHO05D010422 5.3e-54 216.1 428 35.3
Oeu011264.1 Olea europaea HOM05D008234 ORTHO05D010422 1.4e-51 208.0 297 59.3
Nn2g11729 Nelumbo nucifera HOM05D008234 ORTHO05D010422 4.2e-51 206.5 431 53.4
COL.COLO4_28841 Corchorus olitorius HOM05D008234 ORTHO05D010422 1.0e-49 201.8 373 48.5
Psat6g034160 Pisum sativum HOM05D008234 ORTHO05D010422 3.6e-47 193.4 427 33.5
Zm00001eb004480 Zea mays HOM05D008234 ORTHO05D010422 1.5e-45 188.0 388 32.2
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 9.9e-45 185.3 435 43.2
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 1.3e-44 184.9 390 31.5
Gorai.003G103400 Gossypium raimondii HOM05D008234 ORTHO05D001322 2.7e-42 177.2 287 54.0
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 1.3e-41 174.9 384 31.2
Gohir.D03G098650 Gossypium hirsutum HOM05D008234 ORTHO05D010422 4.8e-39 166.4 136 61.8
ECA233G2242 Erigeron canadensis HOM05D008234 ORTHO05D010422 2.0e-37 161.0 275 36.0
HPP92_009609 Vanilla planifolia HOM05D008234 ORTHO05D010422 3.4e-37 160.2 337 29.4
AUR62009335 Chenopodium quinoa HOM05D008234 ORTHO05D010422 9.6e-32 142.1 292 33.9
Gohir.D03G098600 Gossypium hirsutum HOM05D008234 ORTHO05D010422 4.5e-29 133.3 199 41.2
MELO3C003586.2 Cucumis melo HOM05D008234 ORTHO05D010422 4.2e-27 126.7 282 30.1
CsaV3_3G047390 Cucumis sativus L. HOM05D008234 ORTHO05D010422 6.1e-26 122.9 280 30.4
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 9.4e-19 99.0 223 27.8
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 4.6e-18 96.7 190 32.1
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 2.8e-07 60.8 164 37.2
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 8.2e-07 59.3 121 33.9


User provided reference genes

Program Settings