Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.5e-306 1055.4 561 100.0
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.2e-250 869.8 564 83.0
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.7e-241 839.3 567 80.4
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.6e-231 806.2 668 68.9
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.3e-217 760.0 556 72.7
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 5.6e-213 744.6 559 71.9
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 8.1e-212 740.7 565 72.4
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 8.1e-212 740.7 560 71.6
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.8e-211 739.6 551 70.6
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.0e-210 736.1 572 70.8
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.6e-210 735.7 559 70.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.3e-209 733.4 558 70.4
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.9e-209 731.5 561 68.8
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 4.9e-209 731.5 558 71.0
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.4e-209 731.1 561 68.4
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 8.4e-209 730.7 556 70.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 6.0e-207 724.5 571 68.3
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.0e-206 723.8 561 68.6
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.3e-206 722.6 570 68.6
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 6.7e-206 721.1 552 69.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 6.7e-206 721.1 570 68.2
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 6.7e-206 721.1 564 69.1
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.9e-205 719.5 560 68.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 2.5e-205 719.2 562 68.3
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 9.6e-205 717.2 561 69.3
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.2e-204 714.5 560 67.9
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 6.9e-203 711.1 557 67.0
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.2e-202 710.3 551 69.0
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.4e-202 708.8 561 66.7
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.4e-200 703.4 559 67.4
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.7e-199 699.1 551 67.7
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 6.7e-198 694.5 559 67.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 3.3e-197 692.2 555 67.7
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-197 692.2 557 66.6
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 4.3e-197 691.8 563 66.4
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 5.7e-197 691.4 559 66.5
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.3e-196 690.3 561 66.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.8e-196 689.1 558 66.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.8e-195 686.4 560 65.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 9.0e-195 684.1 562 65.3
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-194 683.7 571 65.0
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 2.2e-193 679.5 551 68.1
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.9e-193 679.1 557 64.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.1e-191 672.9 570 65.4
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.6e-191 672.2 578 63.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 4.6e-191 671.8 551 66.2
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.1e-191 671.4 562 64.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 7.9e-191 671.0 545 64.8
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.3e-190 670.2 570 63.7
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.0e-190 669.1 575 64.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-190 669.1 578 63.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-189 666.8 578 62.8
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.5e-189 666.8 571 65.8
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.7e-189 664.8 573 64.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 2.4e-187 659.4 560 63.8
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 6.9e-187 657.9 566 64.5
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.2e-186 657.1 556 62.6
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.0e-186 656.4 557 63.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 5.9e-186 654.8 568 63.7
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 2.2e-185 652.9 554 64.4
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.9e-185 652.5 551 63.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 6.5e-185 651.4 551 64.2
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.4e-184 650.2 562 62.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.9e-184 649.8 571 62.2
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 2.5e-184 649.4 567 62.3
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 7.2e-184 647.9 560 63.2
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.1e-183 646.4 558 62.9
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.6e-183 645.6 564 60.8
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.4e-182 643.7 572 62.4
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.0e-181 639.8 557 62.3
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.3e-181 638.6 561 63.8
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 6.3e-180 634.8 555 62.2
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.2e-178 630.6 559 62.6
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-178 630.2 560 61.8
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.5e-178 628.6 556 61.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.1e-176 624.0 569 60.6
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.9e-176 623.2 566 61.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.2e-176 622.1 569 60.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 7.2e-176 621.3 564 62.6
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 9.7e-173 610.9 548 60.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.1e-171 607.4 422 77.7
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.4e-171 607.1 575 58.1
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.4e-171 606.3 575 58.1
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.0e-169 600.9 562 61.0
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.2e-164 583.2 556 57.9
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.6e-162 577.0 582 54.8
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.6e-162 577.0 562 56.2
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 8.5e-161 571.2 581 54.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 5.5e-160 568.5 560 58.4
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.2e-159 567.4 563 55.6
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.0e-158 562.4 578 54.0
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.2e-157 560.8 570 54.0
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.0e-157 560.1 575 53.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.2e-156 556.6 578 54.0
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 6.3e-156 555.1 543 56.5
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.1e-155 552.7 576 54.0
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 4.1e-155 552.4 576 54.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.5e-154 549.3 573 53.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.5e-154 548.9 577 53.0
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 3.2e-152 542.7 577 54.8
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 5.5e-152 542.0 567 52.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.3e-148 530.8 378 77.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.8e-148 529.6 447 63.1
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 4.3e-144 515.8 560 54.3
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.3e-144 515.0 417 66.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 3.2e-139 499.6 562 52.7
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.3e-137 493.4 549 49.7
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.8e-133 478.0 527 53.1
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.4e-132 475.3 505 55.6
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.3e-128 463.0 433 59.1
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.4e-124 448.7 300 76.3
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.2e-122 444.5 566 46.5
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 2.3e-118 430.3 550 45.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 4.0e-118 429.5 553 45.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 5.6e-112 409.1 281 73.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.8e-111 406.8 564 44.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.3e-105 387.1 559 41.3
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 9.9e-93 345.1 401 48.1
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.4e-91 341.3 499 46.5
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.7e-89 332.4 466 45.3
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-86 324.7 308 58.8
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 2.4e-86 323.9 532 43.0
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.0e-85 320.9 342 55.8
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-66 258.5 225 61.3
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.6e-66 258.1 173 72.8
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.4e-64 250.0 235 60.0
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.8e-63 246.5 158 77.8
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.7e-61 239.2 486 38.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 6.5e-60 236.1 410 37.1
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.0e-49 202.2 140 75.0
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-44 183.0 343 39.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-43 182.2 139 67.6
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 9.4e-43 179.1 138 66.7
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 8.8e-41 172.6 142 57.0
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.9e-37 159.8 118 68.6
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-36 158.7 118 68.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.1e-34 151.4 510 30.2
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-24 119.0 175 43.4
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-24 118.6 86 70.9
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-24 118.6 286 35.0
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.3e-23 112.8 102 53.9
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-22 110.5 109 58.7
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.2e-15 88.2 56 69.6
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 2.9e-15 87.8 67 64.2
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-11 74.7 48 77.1
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-11 73.6 154 38.3
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-10 71.6 43 76.7
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-09 68.9 168 33.3
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.8e-09 68.6 59 57.6
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.9e-09 66.2 46 71.7
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-08 64.3 52 63.5
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.2e-07 61.6 44 65.9
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-07 60.8 36 77.8
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-07 60.8 39 71.8
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 6.4e-07 60.1 167 34.1
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 1.1e-06 59.3 43 65.1
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.4e-06 58.9 178 34.3
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 9.2e-06 56.2 158 30.4


User provided reference genes

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