Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 4.4e-51 204.5 119 100.0
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 7.4e-30 134.0 90 75.6
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.4e-25 119.8 91 69.2
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 2.5e-25 119.0 91 67.0
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 9.3e-25 117.1 88 63.6
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 9.3e-25 117.1 89 64.0
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.2e-24 116.7 89 64.0
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.2e-24 116.7 89 64.0
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.2e-24 116.7 89 64.0
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 3.5e-24 115.2 89 64.0
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 7.9e-24 114.0 94 63.8
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 7.9e-24 114.0 91 63.7
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.3e-23 113.2 90 64.4
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 3.0e-23 112.1 91 63.7
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.9e-23 111.7 91 62.6
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 3.9e-23 111.7 93 65.6
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 5.1e-23 111.3 91 63.7
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 6.7e-23 110.9 89 60.7
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 6.7e-23 110.9 90 62.2
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 8.7e-23 110.5 90 61.1
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 8.7e-23 110.5 90 63.3
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.5e-22 109.8 90 63.3
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 2.5e-22 109.0 90 64.4
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 5.7e-22 107.8 90 61.1
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 9.7e-22 107.1 89 64.0
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 2.8e-21 105.5 95 57.9
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 3.7e-21 105.1 89 60.7
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 1.1e-20 103.6 88 59.1
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 1.4e-20 103.2 91 63.7
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.4e-20 103.2 88 59.1
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 6.9e-20 100.9 89 62.9
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.2e-19 100.1 85 60.0
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-19 99.8 94 53.2
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 2.0e-19 99.4 91 58.2
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 2.0e-19 99.4 93 57.0
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 2.0e-19 99.4 96 47.9
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 3.4e-19 98.6 93 57.0
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 4.5e-19 98.2 90 58.9
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 7.7e-19 97.4 94 54.3
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 7.7e-19 97.4 94 54.3
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 7.7e-19 97.4 88 55.7
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.0e-18 97.1 89 55.1
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.3e-18 96.7 94 54.3
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 1.3e-18 96.7 91 57.1
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 2.2e-18 95.9 84 61.9
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 3.8e-18 95.1 91 62.6
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 5.0e-18 94.7 88 59.1
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 8.5e-18 94.0 88 58.0
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.1e-17 93.6 91 57.1
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.4e-17 93.2 93 55.9
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.2e-17 92.0 88 55.7
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 3.2e-17 92.0 88 58.0
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 4.2e-17 91.7 95 54.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 5.5e-17 91.3 88 55.7
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 7.2e-17 90.9 94 52.1
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-17 90.5 96 53.1
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 9.4e-17 90.5 90 53.3
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.6e-16 89.7 88 56.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 2.1e-16 89.4 78 55.1
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.1e-16 89.4 85 56.5
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.7e-16 89.0 92 52.2
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 3.6e-16 88.6 87 56.3
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.8e-15 86.3 92 48.9
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 6.7e-15 84.3 86 48.8
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 2.0e-14 82.8 97 48.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 5.7e-14 81.3 88 52.3
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 5.7e-14 81.3 88 46.6
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 7.4e-14 80.9 87 51.7
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 3.7e-13 78.6 89 50.6
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 4.8e-13 78.2 87 51.7
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 4.8e-13 78.2 90 47.8
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 6.3e-13 77.8 86 47.7
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.4e-12 75.9 92 45.7
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 3.1e-12 75.5 88 50.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.5e-11 73.2 95 43.2
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.5e-11 73.2 95 43.2
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.5e-11 73.2 94 41.5
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 3.4e-11 72.0 70 57.1
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.9e-11 71.2 66 57.6
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.0e-10 70.5 92 42.4
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.0e-10 70.5 92 42.4
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.3e-10 70.1 90 43.3
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 5.0e-10 68.2 91 46.2
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 6.5e-10 67.8 92 42.4
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.1e-09 67.0 71 52.1
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.5e-09 65.9 91 44.0
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 5.5e-09 64.7 89 39.3
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 7.2e-09 64.3 90 41.1
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 7.2e-09 64.3 88 40.9
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 2.7e-08 62.4 103 40.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 2.7e-08 62.4 56 60.7
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 3.0e-07 58.9 130 34.6
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 4.4e-06 55.1 92 34.8


User provided reference genes

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