Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.0e-283 978.4 479 100.0
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 3.7e-282 974.2 479 99.6
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 1.5e-254 882.5 485 88.9
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.1e-252 876.3 479 89.4
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 6.9e-252 873.6 479 89.4
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.6e-251 871.7 479 89.1
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 2.1e-245 852.0 487 86.4
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.1e-236 823.2 481 84.6
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 7.1e-233 810.4 481 83.6
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 2.7e-232 808.5 482 83.8
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 3.9e-231 804.7 479 82.7
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.5e-230 802.7 481 83.0
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 1.9e-230 802.4 483 82.8
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 3.3e-230 801.6 485 83.1
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 2.8e-229 798.5 482 81.5
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 8.2e-229 797.0 482 81.7
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.1e-228 796.6 482 81.7
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.8e-228 795.8 485 82.3
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.8e-228 795.8 482 81.5
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 5.3e-228 794.3 487 81.3
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 9.0e-228 793.5 485 82.1
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 9.0e-228 793.5 484 82.0
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.2e-227 793.1 485 82.1
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 3.4e-227 791.6 481 81.9
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 4.5e-227 791.2 487 81.1
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 1.0e-226 790.0 488 81.4
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 3.8e-226 788.1 482 82.0
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 3.8e-226 788.1 480 80.6
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 3.8e-226 788.1 480 80.6
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 6.5e-226 787.3 483 81.8
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 8.4e-226 786.9 481 81.3
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 1.1e-225 786.6 486 79.8
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 1.9e-225 785.8 492 80.3
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 1.9e-225 785.8 486 81.3
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 2.5e-225 785.4 486 81.1
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 2.5e-225 785.4 485 80.8
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 2.5e-225 785.4 480 81.7
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 3.2e-225 785.0 480 80.0
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.5e-225 784.3 480 81.2
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 5.5e-225 784.3 487 81.3
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 7.1e-225 783.9 498 79.5
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 7.1e-225 783.9 480 81.2
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.2e-224 783.1 480 80.2
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 3.5e-224 781.6 491 79.8
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 7.9e-224 780.4 484 79.8
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 7.9e-224 780.4 480 80.8
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 7.9e-224 780.4 480 81.2
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 1.3e-223 779.6 499 80.2
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 2.3e-223 778.9 488 80.5
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 3.0e-223 778.5 479 80.6
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 8.7e-223 776.9 479 80.0
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.5e-222 776.2 485 79.8
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.5e-222 775.4 494 78.9
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.5e-222 775.4 483 79.7
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 3.3e-222 775.0 488 80.1
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 6.3e-221 770.8 491 78.6
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.1e-220 770.0 481 79.4
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 1.4e-220 769.6 490 79.0
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 1.8e-220 769.2 481 78.6
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.2e-219 766.5 480 79.2
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.5e-219 766.1 484 79.5
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 2.0e-219 765.8 479 79.5
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 3.4e-219 765.0 493 78.7
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 4.5e-219 764.6 488 78.9
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 4.5e-219 764.6 494 77.1
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.0e-218 763.5 484 78.5
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.0e-218 763.5 479 78.9
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 1.0e-218 763.5 491 77.4
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.7e-218 762.7 493 78.5
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 2.9e-218 761.9 486 78.4
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 2.9e-218 761.9 484 79.1
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 3.2e-217 758.4 482 78.0
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 4.2e-217 758.1 491 77.6
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 4.2e-217 758.1 487 78.6
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 2.1e-216 755.7 486 77.8
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 2.1e-216 755.7 482 79.0
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 2.7e-216 755.4 484 77.9
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 4.6e-216 754.6 483 78.9
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 1.0e-215 753.4 486 77.8
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 1.8e-215 752.7 483 78.7
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 2.3e-215 752.3 484 76.9
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 3.9e-215 751.5 485 77.7
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 5.1e-215 751.1 484 78.1
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 5.1e-215 751.1 484 78.1
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 5.1e-215 751.1 487 77.6
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 5.1e-215 751.1 482 79.3
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 7.4e-214 747.3 483 77.0
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 9.7e-214 746.9 483 76.8
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 1.3e-213 746.5 485 76.5
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.7e-213 746.1 483 78.5
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-212 743.4 483 76.8
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-212 743.4 483 76.8
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 1.8e-212 742.7 485 76.9
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 4.1e-212 741.5 484 77.5
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 9.1e-212 740.3 485 77.3
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 5.9e-211 737.6 481 78.0
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 7.7e-211 737.3 486 77.0
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.2e-208 729.9 424 84.4
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.0e-207 726.9 484 78.1
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 5.1e-207 724.5 486 74.5
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 6.7e-207 724.2 482 75.9
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 4.4e-206 721.5 484 76.4
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 4.4e-206 721.5 487 76.0
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 7.4e-206 720.7 479 73.7
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 5.3e-204 714.5 479 72.9
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 1.2e-203 713.4 480 75.2
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 1.7e-202 709.5 433 81.8
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 2.7e-200 702.2 485 72.8
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.4e-199 699.9 359 94.2
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 1.4e-199 699.9 486 72.0
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 5.3e-196 688.0 483 71.4
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 5.9e-195 684.5 427 75.9
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 9.4e-193 677.2 415 77.8
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 2.1e-192 676.0 359 90.8
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 3.6e-192 675.2 408 78.4
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.7e-192 674.9 406 79.1
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 6.1e-192 674.5 479 70.1
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.5e-190 669.8 413 77.7
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.6e-190 669.1 346 92.8
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.7e-189 665.2 431 73.8
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 5.4e-188 661.4 406 77.8
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 9.1e-188 660.6 481 71.7
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 4.7e-184 648.3 415 75.2
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 4.1e-180 635.2 409 74.3
CSS0016174 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 9.1e-180 634.0 341 90.9
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 5.0e-178 628.2 402 76.1
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 7.0e-172 607.8 405 71.9
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.7e-170 603.2 461 67.7
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 8.0e-168 594.3 402 70.1
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 6.4e-165 584.7 380 78.7
CSS0046928 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.3e-162 576.2 308 91.2
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 1.9e-156 556.6 359 75.2
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 1.7e-146 523.5 429 60.6
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.3e-141 507.3 350 76.3
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 4.9e-141 505.4 399 61.2
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 1.3e-136 490.7 493 55.4
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 8.1e-136 488.0 400 62.8
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 1.1e-129 467.6 480 53.3
MD10G1319900 Malus domestica HOM05D004107 ORTHO05D004738 1.3e-128 464.2 312 76.3
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 2.2e-125 453.4 383 60.1
unitig_748.g7576 Utricularia gibba HOM05D004107 ORTHO05D004738 1.4e-124 450.7 311 71.4
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.1e-121 441.0 274 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 3.7e-96 356.3 206 85.0
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 3.8e-93 346.3 179 93.3
vmacro09068 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.9e-91 338.6 322 56.8
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.3e-88 331.3 381 46.5
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 8.8e-82 308.5 239 61.9
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 9.1e-71 271.9 177 78.0
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 7.2e-68 262.3 187 73.8
BcaC03g16235 Brassica carinata HOM05D004107 ORTHO05D004738 7.3e-60 235.7 161 75.2
BraA02t07513Z Brassica rapa HOM05D004107 ORTHO05D004738 6.1e-59 232.6 160 74.4
Pp3c4_7780 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.1e-55 219.9 131 75.6
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 8.4e-24 115.9 63 90.5
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 6.0e-22 109.8 63 82.5
SGA_v2.0_scaffold24G10311 Striga asiatica HOM05D004107 ORTHO05D004738 4.3e-20 103.6 100 55.0
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 8.1e-19 99.4 62 75.8
Nitab4.5_0000960g0170 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-16 92.0 146 41.1
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 4.6e-14 83.6 142 43.7
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 3.9e-13 80.5 40 95.0
VMungo1383G0329 Vigna mungo HOM05D004107 ORTHO05D033630 3.3e-12 77.4 92 53.3
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 1.2e-09 68.9 327 25.4
Nitab4.5_0001990g0020 Nicotiana tabacum HOM05D002374 ORTHO05D004738 3.8e-08 63.9 89 41.6
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 4.9e-08 63.5 33 87.9
Nitab4.5_0000952g0040 Nicotiana tabacum HOM05D006373 ORTHO05D008145 2.7e-06 57.8 148 30.4


User provided reference genes

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