Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.3e-205 719.5 369 100.0
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.1e-139 499.6 369 73.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 6.9e-135 484.6 364 72.3
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 2.1e-115 419.9 327 64.8
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 4.7e-115 418.7 319 64.6
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.1e-111 405.6 340 66.8
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 6.1e-107 391.7 349 58.5
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 2.2e-104 383.3 349 57.3
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 9.1e-103 377.9 349 57.9
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 7.7e-102 374.8 366 57.7
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 6.5e-101 371.7 349 57.6
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.5e-100 370.5 318 60.7
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.9e-100 370.2 318 59.4
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 6.1e-99 365.2 348 57.2
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 4.0e-98 362.5 369 55.3
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 6.8e-98 361.7 322 59.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 1.2e-97 360.9 319 61.4
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 4.4e-97 359.0 318 57.5
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.1e-95 354.4 343 56.0
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.1e-95 354.4 318 57.9
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.1e-95 352.4 370 54.6
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 5.3e-95 352.1 333 55.9
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 5.3e-95 352.1 369 51.5
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 7.0e-95 351.7 316 56.6
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 9.1e-95 351.3 328 54.9
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.6e-94 350.5 346 55.8
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 4.5e-94 349.0 318 57.9
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.5e-94 349.0 346 55.5
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.2e-93 346.7 316 56.3
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.8e-93 345.9 318 56.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 5.0e-93 345.5 319 56.7
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.2e-92 342.8 365 53.4
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 4.2e-92 342.4 349 52.7
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 9.4e-92 341.3 360 52.8
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 9.4e-92 341.3 318 55.7
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 8.0e-91 338.2 331 55.6
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.4e-90 337.4 349 53.0
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 1.4e-90 337.4 328 55.2
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 5.2e-90 335.5 325 56.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.2e-89 334.3 324 55.6
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.2e-89 334.3 319 54.5
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.2e-89 334.3 328 54.9
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.6e-89 333.2 395 47.3
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 2.6e-89 333.2 327 56.3
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 4.4e-89 332.4 371 53.1
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 5.7e-89 332.0 351 53.3
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 4.8e-88 328.9 347 52.4
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 6.3e-88 328.6 301 58.5
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 8.3e-88 328.2 316 54.4
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.4e-87 327.4 352 51.7
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.8e-87 327.0 348 54.6
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 2.4e-87 326.6 329 54.1
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.4e-87 326.6 329 54.1
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 5.4e-87 325.5 329 54.4
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 5.4e-87 325.5 329 54.4
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 5.4e-87 325.5 329 54.4
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 7.0e-87 325.1 329 55.0
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.6e-86 323.9 349 50.4
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.6e-86 323.9 319 55.8
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 2.0e-86 323.6 349 53.6
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 4.5e-86 322.4 320 55.3
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 4.5e-86 322.4 277 57.8
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 5.9e-86 322.0 325 53.2
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 5.9e-86 322.0 349 51.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 7.7e-86 321.6 330 54.2
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 2.3e-85 320.1 370 49.5
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 3.8e-85 319.3 324 50.6
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 3.8e-85 319.3 318 51.6
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 5.0e-85 318.9 321 55.5
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.5e-84 317.4 344 52.0
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 2.5e-84 316.6 369 52.0
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 3.3e-84 316.2 329 53.2
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 5.5e-84 315.5 342 50.6
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 2.8e-83 313.2 356 52.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 8.9e-82 308.1 325 51.7
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 5.7e-81 305.4 330 51.2
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 7.5e-81 305.1 362 50.3
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 7.5e-81 305.1 362 50.3
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 7.5e-81 305.1 352 52.0
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.7e-80 303.9 330 50.3
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 6.3e-80 302.0 277 55.6
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 7.0e-79 298.5 329 50.5
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 5.9e-78 295.4 224 66.5
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.7e-77 293.9 324 50.3
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 3.0e-69 266.5 325 46.5
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.2e-64 250.4 276 51.1
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.1e-63 248.1 329 44.1
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 6.6e-61 238.8 317 41.6
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 7.3e-60 235.3 224 56.7
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 4.0e-58 229.6 320 44.4
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 5.8e-49 199.1 197 55.3
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.3e-36 156.8 150 56.7
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.7e-32 144.4 124 65.3
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.8e-29 134.4 183 48.6
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 2.5e-28 130.6 149 46.3
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 4.0e-26 123.2 171 40.9
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.2e-23 113.6 125 48.8
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 2.1e-22 110.9 294 31.6
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 3.0e-21 107.1 101 50.5
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 3.0e-21 107.1 310 28.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.9e-20 104.4 150 40.7
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 4.3e-20 103.2 253 30.8
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 1.0e-16 92.0 196 33.2
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 5.0e-16 89.7 195 32.3
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 6.5e-16 89.4 111 43.2
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.5e-12 78.2 96 42.7
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.9e-12 77.8 129 44.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 2.6e-09 67.4 135 38.5


User provided reference genes

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