Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.7e-46 188.3 99 100.0
CSS0017526 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D111394 5.2e-37 157.5 98 88.8
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 7.3e-31 137.1 77 93.5
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 8.0e-30 133.7 77 93.5
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.2e-29 131.0 77 90.9
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.2e-28 129.8 77 90.9
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 7.3e-15 84.0 51 86.3
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.3e-13 79.0 92 53.3
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 6.8e-13 77.4 52 78.8
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 7.5e-12 73.9 51 76.5
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 9.9e-12 73.6 51 76.5
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 8.3e-11 70.5 51 74.5
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 2.4e-10 68.9 53 71.7
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.4e-10 68.9 51 68.6
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.4e-10 68.9 51 70.6
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 3.2e-10 68.6 53 73.6
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 7.1e-10 67.4 51 68.6
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.2e-09 66.6 51 70.6
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.7e-09 65.5 51 64.7
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 2.7e-09 65.5 51 66.7
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 4.6e-09 64.7 53 69.8
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 6.0e-09 64.3 51 68.6
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 7.8e-09 63.9 51 68.6
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 7.8e-09 63.9 51 70.6
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.3e-08 63.2 70 54.3
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 3.0e-08 62.0 52 67.3
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 3.0e-08 62.0 51 62.7
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.9e-08 61.6 41 78.0
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 3.9e-08 61.6 51 60.8
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 5.1e-08 61.2 47 63.8
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 6.6e-08 60.8 51 56.9
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 1.1e-07 60.1 52 63.5
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 1.5e-07 59.7 52 63.5
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.5e-07 59.7 51 60.8
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.5e-07 59.7 51 60.8
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 3.3e-07 58.5 42 69.0
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 4.3e-07 58.2 49 65.3
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 5.6e-07 57.8 53 62.3
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 7.3e-07 57.4 54 59.3
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 7.3e-07 57.4 52 59.6
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 7.3e-07 57.4 44 65.9
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 7.3e-07 57.4 51 56.9
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 9.5e-07 57.0 51 58.8
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 9.5e-07 57.0 51 56.9
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 1.2e-06 56.6 51 64.7
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 2.1e-06 55.8 67 49.3
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 2.8e-06 55.5 48 60.4
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 4.7e-06 54.7 41 63.4
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.1e-06 53.9 42 61.9


User provided reference genes

Program Settings