Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-98 362.5 170 100.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.5e-41 172.2 186 53.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.8e-41 171.0 174 54.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.9e-40 168.7 186 51.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 8.6e-40 167.5 190 50.5
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.3e-39 165.6 186 49.5
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.3e-39 164.5 178 51.1
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.2e-38 163.7 186 49.5
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.2e-38 163.7 196 47.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.1e-38 162.9 196 49.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 2.8e-38 162.5 166 53.6
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.8e-38 162.5 186 50.0
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.8e-38 162.5 189 48.7
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.7e-38 161.8 186 49.5
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.1e-37 159.1 186 48.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.1e-37 159.1 186 48.4
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.0e-37 158.7 186 49.5
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.0e-37 158.7 193 47.2
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 6.8e-37 157.9 174 50.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 8.9e-37 157.5 173 50.3
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.9e-37 157.5 186 48.4
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.2e-36 157.1 186 48.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.5e-36 156.8 174 50.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.5e-36 156.8 186 50.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.0e-36 156.4 186 47.3
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 2.0e-36 156.4 186 48.4
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.0e-36 156.4 193 46.6
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.6e-36 156.0 191 46.6
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.4e-36 155.6 186 47.8
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 3.4e-36 155.6 190 48.4
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 4.4e-36 155.2 186 48.9
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 5.8e-36 154.8 186 47.3
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 5.8e-36 154.8 186 47.8
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.8e-36 154.8 186 47.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.5e-36 154.5 193 45.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 9.8e-36 154.1 186 46.8
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.7e-35 153.3 190 46.3
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.7e-35 153.3 186 47.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 2.2e-35 152.9 186 47.8
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.2e-35 152.9 197 46.2
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.2e-35 152.9 186 46.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.9e-35 152.5 176 55.1
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.4e-35 151.4 186 46.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.4e-35 151.4 149 57.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.4e-35 151.4 177 50.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 8.3e-35 151.0 186 47.3
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 8.3e-35 151.0 186 46.8
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.4e-34 149.4 189 45.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.4e-34 149.4 186 45.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.4e-34 149.4 186 45.2
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.2e-34 149.1 187 45.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.2e-34 149.1 186 45.2
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.2e-34 149.1 186 46.2
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.1e-34 148.7 193 44.6
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 4.1e-34 148.7 186 46.8
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 7.1e-34 147.9 190 45.8
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.1e-34 147.9 184 45.7
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 7.1e-34 147.9 186 45.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 9.2e-34 147.5 186 46.8
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 9.2e-34 147.5 193 44.6
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 9.2e-34 147.5 186 45.2
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.2e-33 147.1 186 45.7
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.2e-33 147.1 149 53.7
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-33 147.1 186 44.6
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.6e-33 146.7 190 45.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.6e-33 146.7 186 46.2
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.6e-33 146.7 186 46.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.1e-33 146.4 161 48.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.7e-33 146.0 186 45.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 3.5e-33 145.6 187 46.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.5e-33 145.6 186 45.2
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 4.6e-33 145.2 186 46.2
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.6e-33 145.2 186 46.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.0e-32 144.1 186 43.5
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.0e-32 144.1 186 43.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-32 144.1 149 53.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.3e-32 143.7 186 46.2
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.3e-32 143.7 186 42.5
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.3e-32 142.9 173 48.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 3.0e-32 142.5 189 45.0
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 3.0e-32 142.5 199 43.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.0e-32 142.5 186 44.6
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.0e-32 142.5 187 44.4
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 3.0e-32 142.5 186 45.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.9e-32 142.1 186 43.5
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.9e-32 142.1 150 52.7
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.9e-32 142.1 149 51.7
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.1e-32 141.7 186 42.5
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 5.1e-32 141.7 186 45.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 5.1e-32 141.7 178 45.5
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.1e-32 141.7 186 43.5
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 6.6e-32 141.4 199 43.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 6.6e-32 141.4 186 43.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 8.6e-32 141.0 149 51.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.5e-31 140.2 186 43.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 4.3e-31 138.7 190 45.3
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 7.3e-31 137.9 186 45.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 7.3e-31 137.9 149 51.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 7.3e-31 137.9 192 42.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-30 137.1 173 46.2
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.2e-30 137.1 186 44.6
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-30 136.7 173 45.1
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.6e-30 136.7 174 44.3
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.1e-30 136.3 171 46.8
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.1e-30 136.3 186 45.2
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.1e-30 136.3 149 51.0
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.1e-30 136.3 149 49.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 3.6e-30 135.6 173 45.7
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 4.7e-30 135.2 187 40.1
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 4.7e-30 135.2 173 45.7
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 6.2e-30 134.8 173 43.9
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 8.1e-30 134.4 184 44.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-29 134.0 149 51.0
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.1e-29 134.0 151 52.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-29 134.0 149 48.3
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.4e-29 133.7 186 42.5
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.3e-29 132.9 195 41.5
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 3.1e-29 132.5 174 46.0
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 4.0e-29 132.1 207 40.6
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.0e-28 129.8 149 49.0
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.8e-28 128.3 172 48.3
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.9e-27 125.9 196 39.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.1e-26 124.0 186 39.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.4e-26 123.6 217 35.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.4e-26 123.6 175 42.9
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.9e-26 123.2 149 46.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 4.1e-26 122.1 176 40.9
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.1e-26 121.3 59 89.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 7.1e-26 121.3 140 47.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 9.2e-26 120.9 149 45.0
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 6.0e-25 118.2 149 43.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.0e-25 118.2 59 88.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.0e-25 118.2 59 88.1
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 5.1e-24 115.2 139 47.5
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 8.6e-24 114.4 150 44.7
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.5e-23 113.6 64 75.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.6e-22 110.2 190 32.1
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.6e-22 110.2 147 42.2
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.7e-22 108.6 151 45.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.4e-21 106.3 145 44.8
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.1e-21 105.9 145 44.1
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.9e-21 104.8 59 74.6
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.9e-21 104.8 59 74.6
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.5e-20 103.6 59 72.9
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.5e-20 103.6 60 71.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.6e-20 102.8 58 74.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.3e-19 100.5 82 53.7
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.3e-19 100.5 191 32.5
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.4e-19 98.2 62 67.7
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 8.4e-19 97.8 140 42.9
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.9e-18 96.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.4e-18 96.3 188 33.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 3.2e-18 95.9 188 34.0
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.1e-17 93.2 64 65.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 7.8e-17 91.3 182 32.4
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.9e-16 89.0 149 33.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.9e-15 86.7 54 66.7
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.6e-14 82.4 59 55.9
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 9.9e-12 74.3 183 29.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.7e-11 73.6 180 30.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.9e-11 72.8 69 56.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 7.9e-09 64.7 51 60.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.1e-08 62.0 48 60.4


User provided reference genes

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