Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 0.0e+00 1103.2 533 100.0
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 0.0e+00 1101.7 533 99.8
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 5.1e-264 914.1 519 83.0
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 1.1e-263 912.9 520 84.6
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 7.4e-263 910.2 519 86.1
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 6.2e-262 907.1 515 83.5
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 1.1e-255 886.3 564 78.2
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 4.2e-250 867.8 510 80.0
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 6.3e-246 854.0 514 78.4
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 7.7e-244 847.0 517 76.8
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.8e-240 835.9 519 76.1
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 2.3e-240 835.5 501 79.0
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 1.4e-237 826.2 513 74.9
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 1.5e-236 822.8 527 73.4
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 1.0e-235 820.1 514 75.1
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 1.0e-235 820.1 500 75.2
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 2.2e-235 818.9 490 78.0
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.8e-235 818.1 517 74.1
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 5.0e-235 817.8 520 74.0
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 8.5e-235 817.0 517 73.7
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 9.4e-234 813.5 509 75.8
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.2e-233 813.1 518 74.5
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 1.6e-233 812.8 490 75.9
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.1e-233 812.4 509 74.9
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 4.7e-233 811.2 514 74.1
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 1.0e-232 810.1 521 74.9
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 3.9e-232 808.1 520 74.6
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 8.8e-232 807.0 480 77.9
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 8.8e-232 807.0 510 74.5
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.1e-231 806.6 519 73.8
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 2.6e-231 805.4 515 72.6
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 3.3e-231 805.1 516 73.1
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 4.4e-231 804.7 531 71.9
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 7.4e-231 803.9 500 74.2
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 9.7e-231 803.5 510 74.5
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 2.8e-230 802.0 498 73.9
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 6.3e-230 800.8 504 73.4
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 8.2e-230 800.4 514 74.3
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.1e-229 798.5 518 73.0
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 9.1e-229 797.0 504 74.0
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.5e-228 796.2 518 73.0
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 4.5e-228 794.7 514 72.6
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.0e-227 793.5 518 71.0
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 1.3e-227 793.1 498 73.3
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 2.2e-227 792.3 518 72.2
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 3.8e-227 791.6 512 73.2
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 8.5e-227 790.4 508 72.4
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.1e-226 790.0 518 70.8
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 1.4e-226 789.6 455 80.2
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.9e-226 789.3 516 72.5
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 5.5e-226 787.7 520 71.9
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 4.7e-225 784.6 496 72.4
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 8.0e-225 783.9 472 77.3
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 1.4e-224 783.1 505 70.7
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 1.8e-224 782.7 519 72.1
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 6.7e-224 780.8 498 71.3
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 2.6e-223 778.9 506 70.6
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 3.3e-223 778.5 469 78.0
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 7.4e-223 777.3 491 72.3
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 2.2e-222 775.8 502 71.1
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 2.8e-222 775.4 490 72.9
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.8e-221 772.7 515 71.1
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.1e-221 771.9 477 75.5
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 2.6e-220 768.8 505 71.1
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 7.7e-220 767.3 515 70.7
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 3.8e-219 765.0 501 69.7
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 6.5e-219 764.2 509 70.9
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.5e-218 762.3 490 72.9
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 4.2e-218 761.5 508 71.5
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 9.4e-218 760.4 460 76.3
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 4.0e-216 755.0 508 68.5
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.7e-214 749.6 514 69.3
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 2.8e-214 748.8 503 68.8
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 3.1e-213 745.3 487 69.6
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 4.1e-213 745.0 483 71.8
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.2e-212 743.4 514 68.9
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.7e-211 739.6 500 70.0
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 8.5e-211 737.3 519 68.2
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 8.5e-211 737.3 490 69.4
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 2.1e-209 732.6 481 71.3
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.4e-208 729.9 460 73.5
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 2.3e-208 729.2 500 69.6
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 2.3e-208 729.2 500 69.6
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 4.0e-208 728.4 500 69.6
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 5.2e-208 728.0 496 68.1
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 7.5e-207 724.2 477 68.8
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 2.8e-206 722.2 483 69.8
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 3.1e-205 718.8 515 66.0
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 4.1e-205 718.4 528 65.9
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 1.6e-204 716.5 473 70.6
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 3.8e-203 711.8 479 68.5
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 9.5e-202 707.2 528 65.3
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 1.0e-200 703.7 520 65.8
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 1.6e-193 679.9 481 67.4
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 9.8e-183 644.0 496 62.5
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 9.9e-167 590.9 378 72.8
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 3.8e-166 589.0 523 53.7
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 1.1e-157 560.8 370 70.8
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 3.9e-155 552.4 362 71.8
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 8.7e-155 551.2 366 72.4
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 7.1e-141 505.0 369 65.0
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 7.7e-127 458.4 497 50.1
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.3e-121 441.0 308 68.8
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.6e-119 433.3 311 66.6
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 1.5e-98 364.4 264 62.9
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 2.6e-90 337.0 214 67.8
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 2.2e-81 307.4 182 76.9
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.0e-71 274.2 178 70.8
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 2.1e-60 237.7 149 74.5
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.8e-59 234.6 148 68.2
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 9.0e-27 125.9 104 63.5
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.9e-16 91.7 51 76.5
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.9e-13 81.6 79 51.9
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 3.7e-12 77.4 82 47.6
Ah.12g060990 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.0e-06 59.3 55 58.2
Oeu030220.2 Olea europaea HOM05D006934 ORTHO05D008743 1.0e-06 59.3 39 69.2


User provided reference genes

Program Settings