Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.5e-71 270.4 135 100.0
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.2e-53 211.8 134 82.8
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 1.5e-42 176.4 117 78.6
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.9e-42 176.0 112 81.2
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 3.3e-42 175.3 116 75.0
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 9.5e-42 173.7 116 72.4
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 2.1e-41 172.6 134 64.9
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 3.6e-41 171.8 134 63.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 6.2e-41 171.0 134 65.7
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 8.1e-41 170.6 134 66.4
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.4e-40 169.9 112 76.8
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.4e-40 169.9 133 63.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.3e-40 169.1 134 61.2
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.3e-40 169.1 134 65.7
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.1e-40 168.7 125 72.8
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 4.0e-40 168.3 134 64.2
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 8.9e-40 167.2 116 69.8
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 8.9e-40 167.2 134 64.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.2e-39 166.8 134 64.2
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 1.5e-39 166.4 116 70.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.0e-39 166.0 132 62.9
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.6e-39 165.6 125 72.0
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 2.6e-39 165.6 134 63.4
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 7.6e-39 164.1 134 61.9
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 4.9e-38 161.4 133 61.7
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.9e-38 161.4 133 61.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 4.9e-38 161.4 111 71.2
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.1e-37 160.2 132 61.4
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.1e-37 160.2 126 66.7
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.9e-37 159.5 132 59.1
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.4e-37 159.1 116 67.2
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.4e-37 159.1 107 72.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 3.2e-37 158.7 132 61.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.1e-37 157.5 116 66.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.1e-37 157.5 111 68.5
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 7.1e-37 157.5 134 59.0
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 9.2e-37 157.1 134 63.4
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-36 156.8 116 68.1
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.2e-36 156.8 111 71.2
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.1e-36 156.0 116 68.1
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.7e-36 155.6 134 59.0
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 4.6e-36 154.8 117 66.7
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.7e-35 152.9 134 60.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.7e-35 152.9 105 72.4
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.3e-35 152.5 131 61.1
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 6.6e-35 151.0 107 69.2
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 8.6e-35 150.6 117 66.7
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.9e-34 149.4 116 63.8
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 2.5e-34 149.1 129 59.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 3.3e-34 148.7 134 58.2
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 3.3e-34 148.7 129 59.7
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 5.6e-34 147.9 115 61.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 9.6e-34 147.1 116 62.9
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.6e-33 146.4 117 64.1
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.6e-33 146.4 116 62.1
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.6e-33 146.4 116 61.2
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.8e-33 145.6 130 59.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.8e-33 145.6 114 62.3
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 2.8e-33 145.6 134 56.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 3.6e-33 145.2 134 56.0
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 4.7e-33 144.8 134 56.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 6.2e-33 144.4 129 57.4
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 6.2e-33 144.4 129 57.4
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.1e-32 143.7 117 64.1
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.4e-32 143.3 129 58.1
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.4e-32 143.3 134 55.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.8e-32 142.9 134 56.7
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 3.1e-32 142.1 134 56.7
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 3.1e-32 142.1 129 57.4
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.0e-32 141.7 129 57.4
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 5.2e-32 141.4 116 57.8
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 6.9e-32 141.0 116 59.5
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.2e-31 140.2 114 61.4
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.0e-31 139.4 135 54.1
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 4.4e-31 138.3 132 56.1
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 5.8e-31 137.9 129 55.8
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 5.8e-31 137.9 129 57.4
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.3e-30 136.7 127 57.5
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.2e-30 136.0 129 55.0
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 4.9e-30 134.8 129 55.0
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 4.9e-30 134.8 105 61.0
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-29 133.7 135 54.1
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-29 133.3 107 64.5
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.2e-29 132.1 107 63.6
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 5.4e-29 131.3 126 54.8
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.1e-29 131.0 107 62.6
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 9.3e-29 130.6 135 53.3
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 9.3e-29 130.6 129 55.8
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.2e-28 130.2 135 51.1
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.6e-28 129.8 107 61.7
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.1e-28 129.4 112 58.0
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 4.6e-28 128.3 116 57.8
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 6.6e-27 124.4 112 57.1
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.6e-25 118.6 107 57.0
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 3.1e-24 115.5 118 50.0
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 3.1e-24 115.5 146 44.5
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 6.9e-24 114.4 118 50.0
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.2e-22 109.4 129 47.3
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 4.9e-22 108.2 113 51.3
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 5.4e-21 104.8 126 45.2
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 2.7e-20 102.4 84 64.3
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 1.8e-19 99.8 123 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.1e-17 92.8 127 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 2.1e-17 92.8 127 40.2
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.9e-13 79.7 98 44.9
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.9e-13 79.7 98 44.9
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.4e-13 79.3 70 55.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.2e-13 79.0 70 57.1
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.5e-13 78.2 70 54.3
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 3.9e-11 72.0 70 50.0
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.9e-11 72.0 62 56.5
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 2.5e-10 69.3 90 43.3
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.8e-09 65.9 52 55.8
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 9.0e-08 60.8 67 46.3
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.9e-06 55.8 34 70.6


User provided reference genes

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