Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 9.2e-65 250.0 118 100.0
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 4.3e-46 188.0 97 90.7
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 3.1e-28 128.6 97 58.8
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.5e-27 126.3 94 56.4
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.5e-27 126.3 97 57.7
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 5.8e-27 124.4 95 58.9
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 3.8e-26 121.7 82 63.4
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 3.8e-26 121.7 86 64.0
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 6.4e-26 120.9 97 59.8
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 2.4e-25 119.0 100 61.0
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 7.1e-25 117.5 106 52.8
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 7.1e-25 117.5 98 55.1
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.6e-24 116.3 103 52.4
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 1.6e-24 116.3 93 54.8
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.7e-24 115.5 103 53.4
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 2.7e-24 115.5 97 56.7
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 7.8e-24 114.0 103 51.5
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 1.3e-23 113.2 88 54.5
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 1.3e-23 113.2 99 58.6
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 1.7e-23 112.8 85 55.3
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 8.7e-23 110.5 103 49.5
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 8.7e-23 110.5 103 49.5
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 1.1e-22 110.2 83 57.8
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 1.1e-22 110.2 71 63.4
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 1.9e-22 109.4 97 53.6
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 3.3e-22 108.6 97 55.7
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 4.3e-22 108.2 109 46.8
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 4.3e-22 108.2 103 47.6
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 5.6e-22 107.8 97 50.5
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 7.3e-22 107.5 97 50.5
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 1.6e-21 106.3 92 55.4
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 2.1e-21 105.9 98 51.0
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 2.8e-21 105.5 97 49.5
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 4.8e-21 104.8 98 52.0
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 1.4e-20 103.2 93 53.8
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 4.0e-20 101.7 104 49.0
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 4.0e-20 101.7 97 50.5
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.2e-19 100.1 97 47.4
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 2.6e-19 99.0 98 46.9
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 4.5e-19 98.2 107 44.9
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 5.8e-19 97.8 97 47.4
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 8.4e-18 94.0 84 52.4
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 8.4e-18 94.0 98 50.0
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.1e-17 93.6 87 48.3
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.1e-17 93.6 87 48.3
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.1e-17 93.6 87 48.3
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.9e-17 92.8 67 59.7
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 1.2e-16 90.1 100 47.0
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 7.9e-16 87.4 58 63.8
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.8e-15 86.3 82 45.1
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 2.3e-15 85.9 80 47.5
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 3.3e-14 82.0 97 41.2
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 7.4e-14 80.9 83 45.8
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 2.1e-13 79.3 70 51.4
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 4.8e-13 78.2 102 40.2
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 6.2e-13 77.8 60 53.3
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 8.1e-13 77.4 104 41.3
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 1.1e-12 77.0 104 39.4
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 1.1e-12 77.0 104 39.4
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 1.1e-12 77.0 101 40.6
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 1.1e-12 77.0 104 39.4
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 1.8e-12 76.3 103 38.8
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 2.4e-12 75.9 90 40.0
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 5.3e-12 74.7 103 38.8
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 5.3e-12 74.7 103 37.9
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 6.9e-12 74.3 84 40.5
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 9.0e-12 73.9 93 41.9
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 9.0e-12 73.9 104 37.5
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 9.0e-12 73.9 104 37.5
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 1.5e-11 73.2 91 38.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 2.6e-11 72.4 87 43.7
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 3.4e-11 72.0 103 37.9
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 3.4e-11 72.0 107 41.1
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 3.4e-11 72.0 103 37.9
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 4.5e-11 71.6 90 38.9
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 4.5e-11 71.6 90 38.9
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 4.5e-11 71.6 90 38.9
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 9.9e-11 70.5 82 41.5
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 1.3e-10 70.1 67 46.3
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 4.9e-10 68.2 83 39.8
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 2.3e-07 59.3 78 42.3


User provided reference genes

Program Settings