Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 0.0e+00 1110.5 560 100.0
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 0.0e+00 1100.1 561 99.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.8e-235 819.3 541 79.1
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 6.2e-228 794.3 561 76.1
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 9.2e-224 780.4 525 75.8
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 6.0e-215 751.1 531 73.1
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.9e-214 748.4 524 73.1
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 2.2e-209 732.6 525 71.4
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.2e-207 726.9 531 71.6
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.7e-207 725.7 525 71.4
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 6.2e-204 714.5 524 70.8
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 3.2e-200 702.2 525 70.1
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 5.1e-198 694.9 528 68.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.5e-197 693.3 530 67.9
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 5.6e-197 691.4 525 68.4
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.8e-196 689.1 525 68.2
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 8.2e-196 687.6 525 67.4
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 2.4e-195 686.0 525 67.0
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.4e-195 686.0 525 67.0
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 6.9e-195 684.5 521 67.6
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 9.0e-195 684.1 525 67.4
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.3e-193 680.2 522 67.8
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 6.5e-193 677.9 538 66.7
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-192 677.2 573 63.4
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.8e-190 669.8 531 67.0
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 3.7e-188 662.1 526 64.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.3e-187 658.3 528 65.3
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.2e-186 657.1 527 64.9
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 4.5e-186 655.2 527 65.1
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 4.2e-184 648.7 521 66.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 1.0e-182 644.0 526 63.5
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 1.0e-182 644.0 521 63.5
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.9e-181 639.8 528 62.5
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 2.2e-180 636.3 523 63.3
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 2.8e-180 636.0 523 62.9
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 4.1e-179 632.1 542 62.0
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 5.3e-179 631.7 420 76.7
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 6.9e-179 631.3 518 63.9
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.2e-178 630.6 521 62.4
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-178 629.8 521 62.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 4.2e-176 622.1 515 65.4
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 6.1e-175 618.2 537 61.8
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 1.8e-174 616.7 530 62.5
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 3.3e-173 612.5 525 61.3
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.7e-172 610.1 528 62.9
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.1e-168 597.4 560 58.4
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 4.2e-168 595.5 524 61.5
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 5.5e-168 595.1 518 59.8
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.5e-165 587.0 529 59.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 3.8e-161 572.4 521 59.5
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 8.5e-161 571.2 502 62.9
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 7.2e-160 568.2 409 69.9
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.6e-159 567.0 522 61.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.6e-159 567.0 522 61.1
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.0e-153 547.7 507 60.2
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 7.2e-152 541.6 548 56.6
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 4.7e-151 538.9 544 56.8
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-150 537.3 478 62.6
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.0e-150 535.8 477 62.5
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.8e-147 526.9 429 64.1
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-145 521.2 548 55.8
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.9e-136 490.3 529 55.2
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.4e-131 474.2 525 47.4
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.6e-127 460.7 460 55.0
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.6e-122 444.1 354 67.5
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 1.6e-114 417.5 365 63.3
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 9.5e-112 408.3 278 74.1
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 6.2e-111 405.6 403 58.3
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 5.4e-107 392.5 331 63.1
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 9.2e-107 391.7 333 64.9
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 1.6e-106 391.0 307 66.8
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.6e-106 389.4 364 60.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 7.8e-106 388.7 337 65.0
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.3e-100 371.3 349 61.0
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.4e-99 367.1 196 89.8
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 3.5e-98 363.2 282 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.9e-96 357.5 531 42.0
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 9.6e-96 355.1 192 85.9
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 3.6e-95 353.2 490 40.8
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.1e-94 351.7 336 59.5
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 8.4e-92 342.0 288 64.9
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.9e-84 317.0 297 61.6
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.8e-81 307.8 246 67.5
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.8e-76 290.0 152 92.1
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.5e-75 287.3 521 36.9
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.1e-72 278.5 148 87.2
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 8.2e-71 272.3 173 74.6
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.4e-70 270.8 173 74.6
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 2.9e-68 263.8 173 72.3
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.0e-65 253.8 341 45.7
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 5.7e-64 249.6 173 68.2
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 9.7e-64 248.8 176 68.2
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 3.7e-63 246.9 173 67.1
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 3.7e-63 246.9 173 67.1
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.1e-62 245.4 173 65.9
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.8e-62 244.6 224 54.5
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.4e-62 244.2 178 66.3
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.0e-60 238.8 174 64.9
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 4.7e-58 229.9 175 63.4
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.2e-55 221.1 173 60.1
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.2e-55 219.2 118 88.1
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.4e-51 208.4 115 83.5
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.4e-46 191.0 173 56.6
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 3.1e-46 190.7 173 54.3
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.5e-43 181.8 387 34.1
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 5.5e-43 179.9 132 68.2
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 7.2e-43 179.5 132 68.2
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.1e-42 177.9 130 64.6
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 6.7e-41 172.9 130 63.8
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-39 167.2 90 87.8
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.8e-36 157.1 696 25.0
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 4.7e-34 150.2 114 69.3
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 3.4e-32 144.1 202 44.6
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.8e-31 140.2 133 50.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.7e-28 131.7 198 34.3
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-18 98.2 69 59.4
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 4.0e-17 94.0 43 97.7
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.5e-16 92.0 43 95.3
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.5e-16 92.0 43 95.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.4e-14 85.5 58 63.8
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.9e-14 85.1 56 64.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.5e-11 74.7 51 60.8
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.2e-10 72.4 35 91.4
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-08 65.5 57 54.4
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.8e-08 63.5 41 68.3
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.3e-07 62.4 128 36.7
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 1.7e-07 62.0 88 42.0
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 2.2e-07 61.6 88 40.9
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 2.9e-07 61.2 88 40.9
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 6.4e-07 60.1 34 82.4
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-06 58.9 39 74.4
PRCOL_00007011 Prasinoderma coloniale HOM05D004669 ORTHO05D000387 4.1e-06 57.4 184 25.0
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 7.0e-06 56.6 201 29.9


User provided reference genes

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