Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.2e-231 806.2 437 100.0
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.7e-103 379.4 501 52.1
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.9e-99 367.1 512 47.9
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.1e-94 349.7 506 48.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 7.7e-93 345.1 507 49.3
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.0e-76 291.6 472 42.8
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.1e-68 262.7 475 40.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 7.3e-67 258.8 506 39.3
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 4.7e-66 256.1 490 39.8
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.3e-63 248.1 499 41.5
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.9e-63 246.1 465 39.4
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.9e-63 246.1 457 40.3
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.6e-61 241.1 509 37.3
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 3.0e-60 236.9 502 38.4
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 6.6e-60 235.7 474 37.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.6e-60 235.7 456 40.8
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.5e-59 234.6 498 36.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.5e-59 233.8 472 37.9
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 4.3e-59 233.0 512 39.3
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.8e-58 230.3 483 38.3
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 2.8e-58 230.3 470 37.4
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 8.1e-58 228.8 494 39.3
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.1e-57 228.4 480 38.1
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.1e-57 226.9 471 36.9
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.1e-57 226.9 485 37.9
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.9e-57 225.3 489 37.0
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.5e-56 224.6 494 37.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.3e-55 221.5 494 37.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.8e-55 219.9 478 37.4
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 4.9e-55 219.5 465 37.4
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 6.0e-53 212.6 482 35.7
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.8e-53 212.2 490 35.3
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.3e-52 211.5 480 36.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.9e-52 209.9 488 37.1
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 6.6e-52 209.1 474 36.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.1e-50 204.1 486 36.6
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.6e-50 203.4 483 37.1
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 3.6e-50 203.4 478 36.6
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 6.2e-50 202.6 479 36.3
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.1e-49 200.3 546 34.4
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 3.1e-49 200.3 498 36.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.2e-48 198.4 490 35.9
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.6e-48 197.2 492 33.7
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.4e-48 196.8 486 36.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 6.4e-47 192.6 441 39.2
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-47 192.2 466 34.8
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 5.4e-46 189.5 476 36.3
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.1e-46 189.1 466 34.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 2.1e-45 187.6 462 35.9
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.6e-45 186.4 515 30.9
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.6e-45 186.4 493 34.7
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.6e-45 186.4 467 34.9
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.0e-44 183.7 468 34.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 3.9e-44 183.3 447 34.0
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.1e-43 181.8 523 35.2
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 9.6e-43 178.7 492 34.8
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-42 178.3 421 35.4
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.6e-42 176.8 472 32.4
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.2e-42 176.0 502 33.1
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.8e-41 174.5 465 34.8
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 3.1e-41 173.7 421 35.4
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 4.0e-41 173.3 430 34.7
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 4.0e-41 173.3 423 35.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.3e-41 172.9 466 32.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 6.9e-41 172.6 417 34.1
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 6.9e-41 172.6 499 32.5
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 6.9e-41 172.6 508 30.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.2e-40 171.8 430 34.9
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.0e-40 171.0 512 32.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 3.4e-40 170.2 466 33.9
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.4e-40 170.2 472 33.7
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 4.5e-40 169.9 432 35.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 4.5e-40 169.9 476 34.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 5.8e-40 169.5 471 32.7
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 7.6e-40 169.1 471 34.6
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.9e-40 168.7 470 33.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 9.9e-40 168.7 442 33.5
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.2e-39 167.5 483 32.1
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 2.9e-39 167.2 492 33.5
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.1e-38 165.2 450 33.6
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.2e-38 163.7 409 34.7
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.2e-38 163.3 460 32.4
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.6e-37 161.4 447 32.2
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.6e-37 161.4 477 33.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.1e-37 161.0 605 29.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 3.5e-37 160.2 406 34.5
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.5e-37 160.2 325 36.6
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 4.6e-37 159.8 509 32.6
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 7.9e-37 159.1 476 32.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.3e-36 157.5 415 34.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 3.0e-36 157.1 484 30.0
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.9e-36 156.8 467 29.8
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 5.1e-36 156.4 491 31.6
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 8.7e-36 155.6 460 32.0
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.1e-35 155.2 482 33.6
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.5e-35 154.1 502 31.1
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.3e-35 153.7 394 34.5
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 4.3e-35 153.3 465 32.9
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 5.6e-35 152.9 477 31.7
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 7.4e-35 152.5 456 30.9
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.3e-34 151.8 475 31.4
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.6e-34 151.4 363 35.8
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.7e-34 150.2 458 32.8
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 8.1e-34 149.1 493 31.4
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-33 148.3 501 30.3
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 3.1e-33 147.1 491 30.3
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.0e-33 146.7 493 31.4
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 5.3e-33 146.4 445 34.4
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 6.9e-33 146.0 507 34.1
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.6e-32 144.1 477 30.2
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.6e-32 144.1 478 31.4
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 4.5e-32 143.3 454 30.2
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.9e-31 140.6 448 32.6
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.9e-31 140.6 466 32.2
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.8e-31 140.2 417 33.1
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.5e-31 139.4 443 30.5
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.2e-30 136.7 477 28.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 5.5e-30 136.3 465 31.0
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.3e-30 135.6 489 31.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.2e-29 135.2 477 30.2
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.0e-28 132.1 493 28.8
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.0e-28 132.1 483 30.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.8e-28 131.3 459 28.3
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.9e-28 130.2 471 28.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 8.7e-28 129.0 416 30.3
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.1e-27 128.6 467 30.8
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.5e-27 128.3 493 27.8
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.9e-27 127.9 412 31.3
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.9e-27 127.9 479 28.6
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.5e-27 127.5 436 28.2
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.4e-27 125.9 479 28.6
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.3e-26 125.2 458 28.4
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-26 124.8 483 28.4
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.1e-26 124.4 483 28.0
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.3e-26 122.9 260 37.7
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.2e-26 122.5 449 30.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.1e-25 122.1 463 30.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.8e-25 121.3 401 29.2
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.3e-25 119.8 463 29.8
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 9.0e-25 119.0 221 38.5
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-24 118.2 437 29.1
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.0e-24 117.9 486 28.4
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.0e-24 117.9 458 29.3
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 3.4e-24 117.1 400 29.2
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.4e-24 117.1 463 29.4
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.0e-23 115.5 200 40.0
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.0e-23 115.5 446 27.4
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.9e-23 114.0 291 34.7
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 5.0e-23 113.2 458 27.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 8.4e-23 112.5 466 27.9
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.9e-22 111.3 401 28.4
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.9e-22 111.3 445 29.0
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 1.9e-22 111.3 454 29.1
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.9e-22 111.3 386 28.8
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.2e-22 110.5 459 28.8
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 7.2e-22 109.4 435 28.3
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 9.3e-22 109.0 464 28.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.9e-20 103.6 472 27.3
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.4e-19 99.4 417 30.2
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-17 95.5 390 26.9
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 5.3e-17 93.2 388 27.3
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-16 92.0 357 27.7
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.2e-16 92.0 285 31.6
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.3e-15 88.6 384 31.5
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 2.2e-15 87.8 469 27.5
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 9.4e-14 82.4 134 44.0
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 3.6e-13 80.5 285 30.2
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 7.9e-13 79.3 98 45.9
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.3e-12 77.8 153 36.6
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.1e-11 75.5 454 27.3
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 9.7e-11 72.4 153 33.3
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-09 68.6 259 28.6
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-09 68.6 152 33.6
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 4.1e-09 67.0 68 51.5
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.1e-09 67.0 388 25.0
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 5.3e-09 66.6 167 33.5
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 6.9e-09 66.2 264 27.3
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 6.9e-09 66.2 99 40.4
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 9.1e-09 65.9 67 49.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.5e-08 65.1 248 27.4
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-08 65.1 67 49.3
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-08 64.7 229 29.3
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 5.0e-07 60.1 86 43.0
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 8.5e-07 59.3 152 30.9
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 7.2e-06 56.2 252 27.8
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 7.2e-06 56.2 467 21.8


User provided reference genes

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