Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 3.6e-123 446.0 225 100.0
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 3.8e-88 329.7 223 74.4
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 9.0e-82 308.5 212 71.7
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.2e-73 281.6 224 63.8
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 2.1e-70 270.8 227 59.9
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 2.1e-70 270.8 208 65.4
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.7e-70 270.4 223 61.4
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 3.6e-70 270.0 226 62.8
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 1.0e-69 268.5 225 60.9
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 2.0e-68 264.2 226 61.1
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 4.3e-68 263.1 187 66.8
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 7.4e-68 262.3 218 60.1
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 4.1e-66 256.5 148 79.1
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 5.9e-65 252.7 200 63.5
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.9e-65 252.7 226 58.4
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 6.5e-64 249.2 168 66.7
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 2.5e-63 247.3 228 56.1
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.5e-63 247.3 181 65.2
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 3.6e-62 243.4 227 57.7
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 4.7e-62 243.0 168 64.9
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.0e-61 241.9 168 64.9
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 1.4e-61 241.5 200 63.0
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 1.4e-61 241.5 194 64.4
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 5.1e-61 239.6 168 64.9
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 8.8e-61 238.8 166 65.1
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.1e-60 238.4 237 56.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 9.7e-60 235.3 224 54.9
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 1.7e-59 234.6 223 54.3
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 8.2e-59 232.3 224 54.0
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.1e-58 231.9 162 64.8
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 1.1e-58 231.9 224 54.0
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.1e-58 231.9 166 63.3
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.8e-58 231.1 228 56.1
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 5.3e-58 229.6 223 54.7
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.6e-57 228.0 225 54.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.0e-57 227.6 181 59.1
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 2.6e-57 227.3 223 55.2
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 3.5e-57 226.9 225 52.9
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.7e-57 225.7 222 55.0
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 1.3e-56 224.9 228 53.9
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.3e-56 224.9 214 57.0
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 5.0e-56 223.0 224 55.4
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 8.5e-56 222.2 175 61.1
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.9e-55 221.1 181 56.4
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.2e-55 220.3 223 52.9
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.2e-55 220.3 222 51.8
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 5.5e-55 219.5 182 57.1
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 2.1e-54 217.6 222 52.7
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 4.7e-54 216.5 225 53.8
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.1e-52 211.8 216 51.9
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 2.6e-52 210.7 167 55.7
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 5.7e-52 209.5 173 59.0
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 5.7e-52 209.5 200 53.0
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 7.5e-52 209.1 200 54.0
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.3e-51 208.4 166 54.8
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.1e-50 205.3 206 51.9
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 1.4e-50 204.9 206 48.5
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.4e-50 204.1 225 49.3
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 4.1e-50 203.4 226 48.7
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 4.1e-50 203.4 228 49.6
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 4.5e-49 199.9 223 49.8
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 4.5e-49 199.9 222 49.1
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 7.7e-49 199.1 224 45.5
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.1e-47 195.3 229 47.6
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.1e-47 195.3 217 52.1
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 3.2e-47 193.7 203 52.7
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 4.2e-47 193.4 223 48.0
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 7.2e-47 192.6 219 47.0
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 7.2e-47 192.6 207 48.3
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 3.6e-46 190.3 216 47.7
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 8.0e-46 189.1 212 47.2
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 8.0e-46 189.1 212 47.2
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 1.8e-45 188.0 212 46.7
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 3.0e-45 187.2 212 47.6
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 4.4e-44 183.3 219 45.2
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 9.1e-42 175.6 214 47.2
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 7.7e-41 172.6 219 43.8
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 7.7e-41 172.6 219 43.8
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 7.7e-41 172.6 222 45.5
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 8.5e-40 169.1 169 48.5
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.5e-39 168.3 214 43.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 3.2e-39 167.2 211 45.0
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 5.5e-39 166.4 215 42.3
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 5.5e-39 166.4 213 44.1
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.2e-38 165.2 214 45.3
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 2.7e-38 164.1 230 41.7
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 3.6e-38 163.7 167 48.5
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.0e-36 157.9 187 43.3
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 5.7e-36 156.4 108 67.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.7e-36 156.4 117 60.7
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 2.8e-35 154.1 196 42.3
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 3.7e-35 153.7 159 48.4
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 4.9e-35 153.3 219 39.7
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.8e-32 143.7 107 64.5
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.1e-31 142.1 107 58.9
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 4.0e-29 133.7 190 40.0
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 1.2e-28 132.1 88 67.0
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.6e-28 131.0 107 56.1
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 5.7e-28 129.8 99 56.6
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 3.0e-24 117.5 107 50.5
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.1e-23 115.5 223 35.4
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 8.6e-08 62.8 52 55.8
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 3.3e-07 60.8 43 65.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.3e-07 60.8 43 65.1
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 7.3e-07 59.7 44 59.1
Nn4g25527 Nelumbo nucifera HOM05D007409 ORTHO05D009264 7.3e-07 59.7 164 29.9
Cc01_g05040 Coffea canephora HOM05D007409 ORTHO05D009264 8.1e-06 56.2 156 26.9


User provided reference genes

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