Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041598 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 8.5e-77 290.4 165 100.0
CSS0017343 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 1.9e-31 139.8 118 61.9
CSS0019943 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 7.8e-30 134.4 118 61.0
Rhsim09G0064500 Rhododendron simsii HOM05D000197 ORTHO05D000114 2.4e-23 112.8 100 54.0
Rhsim09G0065700 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.2e-22 110.5 100 52.0
vmacro00407 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 2.1e-19 99.8 100 49.0
CSS0049097 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 6.2e-19 98.2 101 50.5
CSS0012711 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.8e-18 96.7 63 73.0
Rhsim05G0060400 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.8e-18 96.7 100 50.0
CSS0012550 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.0e-18 94.4 63 74.6
CSS0015037 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 9.0e-18 94.4 101 50.5
CSS0036015 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-16 90.5 63 66.7
CSS0050218 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.4e-16 87.8 57 75.4
CSS0011164 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-15 87.0 63 66.7
Eucgr.B02918 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.3e-13 80.5 116 35.3
CSS0036974 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.9e-13 79.0 63 60.3
CSS0036130 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.7e-13 77.8 63 61.9
FAN12G3177 Fragaria x ananassa HOM05D000197 ORTHO05D000114 8.7e-13 77.8 118 36.4
TWI53G0113 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 8.7e-13 77.8 63 58.7
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.5e-12 76.3 103 36.9
TWI79G1111 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 3.3e-12 75.9 116 37.9
CSS0043399 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.6e-12 75.1 50 72.0
FvH4_4g32720 Fragaria vesca HOM05D000197 ORTHO05D000114 1.3e-11 73.9 119 36.1
FAN12G1358 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.3e-11 73.9 119 36.1
MD16G1024400 Malus domestica HOM05D000197 ORTHO05D000114 1.6e-11 73.6 118 37.3
MD16G1025300 Malus domestica HOM05D000197 ORTHO05D000114 1.6e-11 73.6 118 37.3
COL.COLO4_13150 Corchorus olitorius HOM05D000197 ORTHO05D000114 2.1e-11 73.2 100 35.0
Atru.chr10.1143 Acer truncatum HOM05D000004 ORTHO05D000002 2.8e-11 72.8 63 57.1
CSS0030531 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 6.2e-11 71.6 98 37.8
CSS0043149 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 1.1e-10 70.9 116 34.5
FAN22G0586 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.1e-10 70.9 118 32.2
Cc00_g22130 Coffea canephora HOM05D000197 ORTHO05D000114 1.4e-10 70.5 115 36.5
QL03p033474 Quercus lobata HOM05D000197 ORTHO05D000114 1.8e-10 70.1 116 31.0
QL03p033522 Quercus lobata HOM05D000197 ORTHO05D000114 1.8e-10 70.1 116 33.6
Haze_10970 Corylus avellana HOM05D000197 ORTHO05D000114 2.4e-10 69.7 116 30.2
Haze_10976 Corylus avellana HOM05D000197 ORTHO05D000114 2.4e-10 69.7 116 31.0
RcHm_v2.0_Chr4g0441681 Rosa chinensis HOM05D000197 ORTHO05D000114 2.4e-10 69.7 118 33.1
CANSAT64G2434 Cannabis sativa HOM05D000197 ORTHO05D000114 3.1e-10 69.3 101 35.6
Eucgr.G02172 Eucalyptus grandis HOM05D000197 ORTHO05D000114 3.1e-10 69.3 119 32.8
Eucgr.B02920 Eucalyptus grandis HOM05D000197 ORTHO05D000114 4.0e-10 68.9 116 32.8
QL03p033507 Quercus lobata HOM05D000197 ORTHO05D000114 4.0e-10 68.9 98 32.7
TWI32G1180 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 4.0e-10 68.9 96 36.5
Cc11_g08360 Coffea canephora HOM05D000197 ORTHO05D000114 6.9e-10 68.2 116 31.0
CiPaw.05G195600 Carya illinoinensis HOM05D000197 ORTHO05D000114 9.0e-10 67.8 116 30.2
CiPaw.05G195500 Carya illinoinensis HOM05D000197 ORTHO05D000114 1.2e-09 67.4 116 31.9
Cc11_g08370 Coffea canephora HOM05D000197 ORTHO05D000114 1.2e-09 67.4 118 34.7
MD16G1024700 Malus domestica HOM05D000197 ORTHO05D000114 1.5e-09 67.0 118 33.9
Atru.chr1.1649 Acer truncatum HOM05D000004 ORTHO05D000002 2.0e-09 66.6 63 50.8
CANSAT64G2178 Cannabis sativa HOM05D000197 ORTHO05D000114 2.0e-09 66.6 101 33.7
Prupe.1G328200 Prunus persica HOM05D000197 ORTHO05D000114 2.0e-09 66.6 118 34.7
Cc00_g22120 Coffea canephora HOM05D000197 ORTHO05D000114 2.6e-09 66.2 97 34.0
Eucgr.B02915 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.6e-09 66.2 133 30.1
MD16G1025600 Malus domestica HOM05D000197 ORTHO05D000114 3.4e-09 65.9 118 33.9
PGR102G2287 Punica granatum HOM05D000197 ORTHO05D000114 3.4e-09 65.9 102 33.3
GSVIVG01011726001 Vitis vinifera HOM05D000197 ORTHO05D000114 3.4e-09 65.9 117 33.3
CSS0035406 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.5e-09 65.5 43 72.1
CiPaw.05G195400 Carya illinoinensis HOM05D000197 ORTHO05D000114 5.8e-09 65.1 116 31.0
COL.COLO4_25084 Corchorus olitorius HOM05D000197 ORTHO05D000114 5.8e-09 65.1 97 30.9
Atru.chr10.1020 Acer truncatum HOM05D000004 ORTHO05D000002 7.6e-09 64.7 74 44.6
Glyma.20G017900 Glycine max HOM05D000197 ORTHO05D000114 7.6e-09 64.7 122 31.1
Cfa008631 Carpinus fangiana HOM05D000197 ORTHO05D000114 1.0e-08 64.3 116 31.0
MD13G1023300 Malus domestica HOM05D000197 ORTHO05D000114 1.0e-08 64.3 125 28.0
Prupe.1G327600 Prunus persica HOM05D000197 ORTHO05D000114 1.0e-08 64.3 102 35.3
CSS0033237 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-08 63.9 48 64.6
Prupe.1G327300 Prunus persica HOM05D000197 ORTHO05D000114 1.3e-08 63.9 116 31.9
PGR102G0783 Punica granatum HOM05D000197 ORTHO05D000114 1.7e-08 63.5 102 32.4
Dinv28034 Davidia involucrata HOM05D000197 ORTHO05D000114 2.2e-08 63.2 98 32.7
MD16G1026000 Malus domestica HOM05D000197 ORTHO05D000114 2.2e-08 63.2 119 34.5
Manes.15G129650 Manihot esculenta HOM05D000197 ORTHO05D000114 3.8e-08 62.4 98 33.7
Sed0004882 Sechium edule HOM05D000197 ORTHO05D000114 3.8e-08 62.4 97 33.0
CSS0023312 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.9e-08 62.0 46 63.0
FvH4_4g32731 Fragaria vesca HOM05D000197 ORTHO05D000114 4.9e-08 62.0 83 39.8
Potri.008G131100 Populus trichocarpa HOM05D000197 ORTHO05D000114 4.9e-08 62.0 107 30.8
Prupe.1G327500 Prunus persica HOM05D000197 ORTHO05D000114 4.9e-08 62.0 116 31.0
CAN.G824.35 Capsicum annuum HOM05D000004 ORTHO05D000002 6.5e-08 61.6 80 42.5
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 6.5e-08 61.6 80 42.5
Manes.18G114700 Manihot esculenta HOM05D000197 ORTHO05D000114 6.5e-08 61.6 99 30.3
PGR119G1904 Punica granatum HOM05D000197 ORTHO05D000114 6.5e-08 61.6 118 27.1
SHI16726 Sapria himalayana HOM05D000004 ORTHO05D000002 6.5e-08 61.6 63 47.6
SHI18910 Sapria himalayana HOM05D000004 ORTHO05D000002 6.5e-08 61.6 58 51.7
Cfa008630 Carpinus fangiana HOM05D000197 ORTHO05D000114 8.4e-08 61.2 116 30.2
FAN22G1712 Fragaria x ananassa HOM05D000197 ORTHO05D000114 8.4e-08 61.2 99 32.3
MD13G1023200 Malus domestica HOM05D000197 ORTHO05D000114 8.4e-08 61.2 117 28.2
Prupe.1G327400 Prunus persica HOM05D000197 ORTHO05D000114 8.4e-08 61.2 98 30.6
TPR.G20233 Trifolium pratense HOM05D000004 ORTHO05D000002 8.4e-08 61.2 63 44.4
GSVIVG01011728001 Vitis vinifera HOM05D000197 ORTHO05D000114 8.4e-08 61.2 117 31.6
Haze_10969 Corylus avellana HOM05D000197 ORTHO05D000114 1.1e-07 60.8 96 37.5
Prupe.1G328000 Prunus persica HOM05D000197 ORTHO05D000114 1.1e-07 60.8 116 31.0
Dinv18606 Davidia involucrata HOM05D000197 ORTHO05D000114 1.4e-07 60.5 116 30.2
Dinv26222 Davidia involucrata HOM05D000197 ORTHO05D000114 1.4e-07 60.5 116 30.2
Manes.15G130200 Manihot esculenta HOM05D000197 ORTHO05D000114 1.4e-07 60.5 98 33.7
Potri.008G131300 Populus trichocarpa HOM05D000197 ORTHO05D000114 1.4e-07 60.5 100 32.0
QL04p085052 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-07 60.5 63 47.6
QL08p043961 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-07 60.5 63 47.6
Sed0022109 Sechium edule HOM05D000197 ORTHO05D000114 1.4e-07 60.5 108 29.6
Eucgr.G02170 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.9e-07 60.1 119 28.6
Manes.15G129500 Manihot esculenta HOM05D000197 ORTHO05D000114 1.9e-07 60.1 98 31.6
Manes.15G129900 Manihot esculenta HOM05D000197 ORTHO05D000114 1.9e-07 60.1 98 29.6
Manes.18G114800 Manihot esculenta HOM05D000197 ORTHO05D000114 1.9e-07 60.1 99 29.3
Prupe.1G327700 Prunus persica HOM05D000197 ORTHO05D000114 1.9e-07 60.1 116 31.0
PGR142G1929 Punica granatum HOM05D000197 ORTHO05D000114 1.9e-07 60.1 118 26.3
Atru.chr11.716 Acer truncatum HOM05D000197 ORTHO05D000114 2.5e-07 59.7 100 32.0
QL01p053992 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-07 59.7 69 43.5
Atru.chr1.2389 Acer truncatum HOM05D000004 ORTHO05D000002 3.2e-07 59.3 63 44.4
CSS0026486 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.2e-07 59.3 48 58.3
ECA240G0488 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-07 59.3 63 46.0
Lj6C744T11 Lonicera japonica HOM05D000197 ORTHO05D000114 3.2e-07 59.3 116 30.2
Nitab4.5_0001238g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 3.2e-07 59.3 98 32.7
Haze_10959 Corylus avellana HOM05D000197 ORTHO05D000114 4.2e-07 58.9 118 29.7
Dinv18604 Davidia involucrata HOM05D000197 ORTHO05D000114 4.2e-07 58.9 116 29.3
Dinv26220 Davidia involucrata HOM05D000197 ORTHO05D000114 4.2e-07 58.9 116 29.3
MD16G1025800 Malus domestica HOM05D000197 ORTHO05D000114 4.2e-07 58.9 117 29.1
Rhsim04G0127100 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.2e-07 58.9 69 37.7
Eucgr.G02175 Eucalyptus grandis HOM05D000197 ORTHO05D000114 5.5e-07 58.5 129 26.4
Rhsim09G0107500 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.5e-07 58.5 63 42.9
Atru.chr11.697 Acer truncatum HOM05D000197 ORTHO05D000114 7.1e-07 58.2 117 29.1
Haze_10952 Corylus avellana HOM05D000197 ORTHO05D000114 7.1e-07 58.2 118 32.2
Haze_10955 Corylus avellana HOM05D000197 ORTHO05D000114 7.1e-07 58.2 118 30.5
PGR102G1085 Punica granatum HOM05D000197 ORTHO05D000114 7.1e-07 58.2 102 31.4
Sc11g0003690 Simmondsia chinensis HOM05D000197 ORTHO05D000114 7.1e-07 58.2 116 30.2
Dinv18607 Davidia involucrata HOM05D000197 ORTHO05D000114 9.3e-07 57.8 116 28.4
Dinv26223 Davidia involucrata HOM05D000197 ORTHO05D000114 9.3e-07 57.8 116 28.4
Lj6A743T30 Lonicera japonica HOM05D000197 ORTHO05D000114 9.3e-07 57.8 118 29.7
Atru.chr11.713 Acer truncatum HOM05D000197 ORTHO05D000114 1.2e-06 57.4 101 29.7
Ciclev10017056m.g Citrus clementina HOM05D000197 ORTHO05D000114 1.2e-06 57.4 99 32.3
TWI53G1541 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 1.2e-06 57.4 118 29.7
Cfa014970 Carpinus fangiana HOM05D000197 ORTHO05D000114 1.6e-06 57.0 118 30.5
Haze_10956 Corylus avellana HOM05D000197 ORTHO05D000114 1.6e-06 57.0 118 32.2
Lj3A869T12 Lonicera japonica HOM05D000197 ORTHO05D000114 1.6e-06 57.0 116 31.0
Sc11g0003770 Simmondsia chinensis HOM05D000197 ORTHO05D000114 1.6e-06 57.0 116 28.4
Manes.15G129800 Manihot esculenta HOM05D000197 ORTHO05D000114 2.1e-06 56.6 98 29.6
PGR042G0113 Punica granatum HOM05D000197 ORTHO05D000114 2.1e-06 56.6 132 30.3
SHI20497 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-06 56.6 54 51.9
GSVIVG01011718001 Vitis vinifera HOM05D000197 ORTHO05D000114 2.1e-06 56.6 100 34.0
CSS0042683 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.7e-06 56.2 64 45.3
ClCG07G007240 Citrullus lanatus HOM05D000197 ORTHO05D000114 2.7e-06 56.2 112 31.2
Haze_10951 Corylus avellana HOM05D000197 ORTHO05D000114 2.7e-06 56.2 118 32.2
Dinv26218 Davidia involucrata HOM05D000197 ORTHO05D000114 2.7e-06 56.2 116 28.4
Manes.15G129575 Manihot esculenta HOM05D000197 ORTHO05D000114 2.7e-06 56.2 98 29.6
Prupe.1G328600 Prunus persica HOM05D000197 ORTHO05D000114 2.7e-06 56.2 99 32.3
Rhsim01G0051200 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.7e-06 56.2 63 42.9
Rhsim09G0095800 Rhododendron simsii HOM05D000197 ORTHO05D000114 2.7e-06 56.2 116 29.3
RcHm_v2.0_Chr5g0082941 Rosa chinensis HOM05D000004 ORTHO05D000002 2.7e-06 56.2 64 39.1
Atru.ctg1438.1 Acer truncatum HOM05D000004 ORTHO05D000002 3.5e-06 55.8 77 42.9
CSS0043974 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.5e-06 55.8 48 56.2
CiPaw.06G047600 Carya illinoinensis HOM05D000197 ORTHO05D000114 3.5e-06 55.8 98 31.6
Dinv18603 Davidia involucrata HOM05D000197 ORTHO05D000114 3.5e-06 55.8 116 27.6
Glyma.09G102400 Glycine max HOM05D000197 ORTHO05D000114 3.5e-06 55.8 98 27.6
PGR119G0513 Punica granatum HOM05D000197 ORTHO05D000114 3.5e-06 55.8 103 29.1
Rhsim09G0095700 Rhododendron simsii HOM05D008818 ORTHO05D000114 3.5e-06 55.8 116 29.3
RcHm_v2.0_Chr6g0258591 Rosa chinensis HOM05D000004 ORTHO05D000002 3.5e-06 55.8 63 41.3
GSVIVG01011719001 Vitis vinifera HOM05D000197 ORTHO05D000114 3.5e-06 55.8 98 30.6
Ciclev10017061m.g Citrus clementina HOM05D000197 ORTHO05D000114 4.6e-06 55.5 119 28.6
Dinv18605 Davidia involucrata HOM05D000197 ORTHO05D000114 4.6e-06 55.5 116 28.4
Dinv26219 Davidia involucrata HOM05D000197 ORTHO05D000114 4.6e-06 55.5 116 27.6
Dinv26221 Davidia involucrata HOM05D000197 ORTHO05D000114 4.6e-06 55.5 116 28.4
Manes.15G130000 Manihot esculenta HOM05D000197 ORTHO05D000114 4.6e-06 55.5 99 30.3
Manes.17G079184 Manihot esculenta HOM05D000197 ORTHO05D000114 4.6e-06 55.5 119 29.4
Peaxi162Scf00104g00614 Petunia axillaris HOM05D000197 ORTHO05D000114 4.6e-06 55.5 98 31.6
Peaxi162Scf00198g00148 Petunia axillaris HOM05D000197 ORTHO05D000114 4.6e-06 55.5 98 31.6
RcHm_v2.0_Chr1g0339801 Rosa chinensis HOM05D000004 ORTHO05D000002 4.6e-06 55.5 63 41.3
Sc11g0003670 Simmondsia chinensis HOM05D000197 ORTHO05D000114 4.6e-06 55.5 116 28.4
GSVIVG01011724001 Vitis vinifera HOM05D000197 ORTHO05D000114 4.6e-06 55.5 99 29.3
Cfa014969 Carpinus fangiana HOM05D000197 ORTHO05D000114 6.0e-06 55.1 103 30.1
MELO3C015014.2 Cucumis melo HOM05D000197 ORTHO05D000114 6.0e-06 55.1 110 29.1
CsaV3_5G014880 Cucumis sativus L. HOM05D000197 ORTHO05D000114 6.0e-06 55.1 110 29.1
FvH4_4g32750 Fragaria vesca HOM05D000197 ORTHO05D000114 6.0e-06 55.1 99 31.3
Peaxi162Scf00723g00026 Petunia axillaris HOM05D000197 ORTHO05D000114 6.0e-06 55.1 116 27.6
PGR042G3838 Punica granatum HOM05D000197 ORTHO05D000114 6.0e-06 55.1 106 33.0
Sabra08G0100000 Salix brachista HOM05D000197 ORTHO05D000114 6.0e-06 55.1 97 34.0
SHI44582 Sapria himalayana HOM05D000004 ORTHO05D000002 6.0e-06 55.1 78 39.7
Sc11g0003750 Simmondsia chinensis HOM05D000197 ORTHO05D000114 6.0e-06 55.1 116 30.2
Atru.chr2.1914 Acer truncatum HOM05D000004 ORTHO05D000002 7.9e-06 54.7 40 60.0
AUR62009319 Chenopodium quinoa HOM05D000197 ORTHO05D000114 7.9e-06 54.7 146 25.3
Eucgr.G02173 Eucalyptus grandis HOM05D000197 ORTHO05D000114 7.9e-06 54.7 106 25.5
FvH4_4g32770 Fragaria vesca HOM05D000197 ORTHO05D000114 7.9e-06 54.7 99 32.3
Manes.17G079050 Manihot esculenta HOM05D000197 ORTHO05D000114 7.9e-06 54.7 119 27.7
Manes.17G079212 Manihot esculenta HOM05D000197 ORTHO05D000114 7.9e-06 54.7 119 29.4
Rhsim01G0082400 Rhododendron simsii HOM05D000004 ORTHO05D000002 7.9e-06 54.7 63 42.9
RcHm_v2.0_Chr1g0324511 Rosa chinensis HOM05D000197 ORTHO05D000114 7.9e-06 54.7 99 32.3


User provided reference genes

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