Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.8e-93 344.4 159 100.0
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.8e-85 317.8 159 91.8
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.3e-85 317.4 156 92.3
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.3e-85 317.4 156 92.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.0e-83 312.4 159 90.6
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.9e-83 310.8 159 89.9
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 2.2e-82 308.9 159 88.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.0e-82 307.8 159 89.9
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.1e-81 306.6 159 89.9
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.5e-81 305.4 159 87.4
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 7.2e-81 303.9 159 87.4
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 9.4e-81 303.5 159 88.1
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.2e-80 303.1 159 87.4
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.6e-80 302.8 159 85.5
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.1e-80 302.4 159 86.8
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 4.7e-80 301.2 159 87.4
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.0e-80 300.4 159 86.2
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 8.0e-80 300.4 159 86.2
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 8.0e-80 300.4 159 86.8
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.0e-79 300.1 159 86.8
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.4e-79 299.7 159 87.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.4e-79 299.7 159 87.4
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.8e-79 299.3 159 86.2
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 2.3e-79 298.9 159 86.2
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.0e-79 298.5 159 85.5
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 3.0e-79 298.5 159 86.8
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.9e-79 298.1 159 84.9
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 3.9e-79 298.1 159 85.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 3.9e-79 298.1 159 86.8
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.2e-79 297.7 159 86.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 6.7e-79 297.4 159 85.5
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 6.7e-79 297.4 159 84.9
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 6.7e-79 297.4 159 86.2
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.1e-78 296.6 159 86.2
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.5e-78 296.2 159 85.5
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 3.3e-78 295.0 159 85.5
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 3.3e-78 295.0 159 84.3
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.4e-78 294.7 159 84.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 4.4e-78 294.7 159 86.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 9.7e-78 293.5 158 85.4
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-77 293.1 159 84.9
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.7e-77 292.7 159 85.5
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.7e-77 292.7 159 82.4
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.7e-77 292.7 160 84.4
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.7e-77 292.7 159 85.5
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.2e-77 292.4 159 84.3
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.8e-77 292.0 159 84.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.7e-77 291.6 159 83.0
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.7e-77 291.6 159 83.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 3.7e-77 291.6 159 83.6
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 6.3e-77 290.8 159 84.3
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 6.3e-77 290.8 159 83.6
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 6.3e-77 290.8 159 82.4
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 8.2e-77 290.4 159 83.6
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 8.2e-77 290.4 157 84.7
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.1e-76 290.0 159 82.4
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.1e-76 290.0 158 83.5
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.1e-76 290.0 159 84.3
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.4e-76 288.9 159 82.4
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 5.3e-76 287.7 159 83.6
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.0e-76 287.3 159 81.1
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 7.0e-76 287.3 159 81.1
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 7.0e-76 287.3 159 84.9
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 9.1e-76 287.0 159 82.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 9.1e-76 287.0 159 84.3
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 9.1e-76 287.0 159 81.1
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.2e-75 286.6 159 81.1
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-75 286.6 159 81.1
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.2e-75 286.6 159 81.8
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.6e-75 286.2 159 83.0
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-75 286.2 159 83.0
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-75 286.2 159 83.0
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.0e-75 285.8 159 83.0
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.0e-75 285.8 159 82.4
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.0e-75 285.8 159 81.8
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.6e-75 285.4 159 81.8
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.6e-75 285.4 159 82.4
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.6e-75 285.4 159 82.4
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.6e-75 285.4 159 82.4
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.6e-75 285.4 159 82.4
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.5e-75 284.6 159 81.1
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 4.5e-75 284.6 159 81.1
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.5e-75 284.6 159 82.4
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 5.9e-75 284.3 159 81.1
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.9e-75 284.3 159 82.4
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 7.7e-75 283.9 159 81.1
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 7.7e-75 283.9 159 83.0
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-74 283.5 159 80.5
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.0e-74 283.5 159 80.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.0e-74 283.5 159 80.5
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.0e-74 283.5 159 80.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.3e-74 283.1 159 82.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-74 282.7 159 80.5
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.7e-74 282.7 159 80.5
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.7e-74 282.7 159 82.4
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.2e-74 282.3 159 81.1
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.2e-74 282.3 158 81.6
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 2.9e-74 282.0 159 81.8
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 3.8e-74 281.6 157 83.4
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 3.8e-74 281.6 159 81.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 5.0e-74 281.2 159 81.8
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 5.0e-74 281.2 159 81.1
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 6.5e-74 280.8 159 82.4
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 8.5e-74 280.4 159 80.5
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.1e-73 280.0 159 81.1
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.1e-73 280.0 159 79.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.5e-73 279.6 159 80.5
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.5e-73 279.6 157 81.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.9e-73 279.3 160 80.6
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.9e-73 279.3 160 80.6
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.9e-73 279.3 160 80.6
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.9e-73 279.3 160 80.6
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.9e-73 279.3 160 80.6
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.5e-73 278.9 157 81.5
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.5e-73 278.9 159 79.2
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.2e-73 278.5 159 79.2
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 3.2e-73 278.5 159 79.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.2e-73 278.1 159 79.9
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.2e-73 278.1 157 80.3
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 7.2e-73 277.3 158 78.5
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.2e-72 276.6 157 79.6
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.1e-72 275.8 159 80.5
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.1e-72 275.8 157 80.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.0e-71 273.5 159 79.9
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.4e-71 273.1 159 79.9
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.3e-71 272.3 176 74.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 6.8e-71 270.8 160 78.1
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 8.8e-71 270.4 159 78.0
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.6e-70 268.9 158 78.5
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 3.4e-70 268.5 159 76.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.7e-69 265.0 160 75.0
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.7e-69 265.0 159 77.4
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 4.8e-69 264.6 159 76.1
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 6.3e-69 264.2 159 74.8
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.1e-68 263.5 159 74.8
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.0e-68 260.8 159 74.8
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.2e-66 255.8 158 72.8
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 3.2e-65 251.9 140 84.3
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.4e-65 250.4 159 70.4
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.4e-65 250.4 159 70.4
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 4.7e-64 248.1 212 59.9
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.5e-62 243.0 159 73.6
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.2e-59 233.4 158 69.6
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 8.6e-58 227.3 159 67.3
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 5.5e-57 224.6 158 68.4
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.2e-56 223.4 163 65.0
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.8e-56 222.2 159 64.8
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 6.1e-56 221.1 158 66.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.3e-55 219.2 152 67.1
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 8.9e-39 164.1 176 48.9
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.6e-38 162.5 158 53.8
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-35 153.7 88 80.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 5.6e-33 144.8 97 70.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 6.4e-29 131.3 157 41.4
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.9e-28 129.8 83 72.3
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.0e-26 124.0 83 68.7
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.7e-26 123.2 153 38.6
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 2.3e-26 122.9 83 67.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.5e-25 119.4 90 55.6
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.4e-23 112.8 75 70.7
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.2e-20 102.4 156 34.6
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 5.3e-15 85.1 50 72.0
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.2e-14 84.0 96 44.8
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.4e-14 82.4 55 67.3
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.5e-09 67.0 110 39.1


User provided reference genes

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