Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 4.0e-159 564.7 279 100.0
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.7e-157 558.1 279 98.9
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.2e-116 421.8 285 74.0
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 4.6e-115 418.3 283 76.0
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.8e-112 408.3 286 72.0
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.0e-106 390.6 293 69.3
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 6.7e-106 387.9 273 70.7
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 8.7e-106 387.5 281 69.4
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 1.9e-105 386.3 295 67.5
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 5.6e-105 384.8 281 69.0
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 7.4e-105 384.4 285 69.5
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.6e-104 382.1 228 80.7
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 6.2e-104 381.3 285 68.4
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 8.1e-104 380.9 280 68.9
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.4e-103 380.2 277 67.1
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.4e-103 379.4 229 77.7
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 5.3e-103 378.3 228 77.6
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.2e-102 377.1 283 68.2
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 1.5e-102 376.7 289 65.4
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 2.6e-102 375.9 273 69.6
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.6e-102 375.9 283 66.8
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 2.6e-102 375.9 290 66.2
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 2.6e-102 375.9 298 65.1
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 2.6e-102 375.9 288 65.3
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.5e-102 375.2 284 66.9
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 5.8e-102 374.8 289 65.4
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.7e-101 373.2 292 67.1
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 2.2e-101 372.9 290 67.2
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.2e-101 372.9 282 66.3
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 4.9e-101 371.7 275 66.9
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.2e-100 369.0 282 64.5
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 4.2e-100 368.6 277 67.9
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 5.5e-100 368.2 278 66.5
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 9.3e-100 367.5 279 67.0
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.2e-99 367.1 229 76.4
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.6e-99 366.7 280 67.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.1e-99 366.3 283 65.4
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.1e-99 366.3 269 68.8
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 6.0e-99 364.8 277 66.1
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 7.9e-99 364.4 223 77.1
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 7.9e-99 364.4 290 64.5
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 1.0e-98 364.0 284 63.0
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.3e-98 363.6 284 62.7
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.3e-98 363.6 294 63.6
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 2.3e-98 362.8 278 65.1
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.0e-98 362.5 284 63.4
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 3.0e-98 362.5 290 64.8
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 5.1e-98 361.7 277 64.6
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 5.1e-98 361.7 273 66.3
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 8.7e-98 360.9 278 63.7
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 8.7e-98 360.9 282 65.2
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 1.1e-97 360.5 277 65.7
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.5e-97 360.1 224 75.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.6e-97 358.2 279 63.4
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 2.1e-96 356.3 279 65.6
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 3.7e-96 355.5 224 75.4
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.2e-96 354.8 283 63.6
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.8e-95 353.2 227 73.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.8e-95 353.2 241 70.1
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.4e-95 352.8 277 63.2
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 3.1e-95 352.4 225 72.9
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 6.9e-95 351.3 230 72.2
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 9.0e-95 350.9 293 60.1
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 1.5e-94 350.1 291 59.8
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 2.0e-94 349.7 266 66.9
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 2.6e-94 349.4 254 66.9
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 3.4e-94 349.0 280 63.6
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 4.5e-94 348.6 291 61.5
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.0e-93 347.4 238 71.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.9e-93 345.9 279 62.4
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.9e-93 345.9 254 65.4
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 2.9e-93 345.9 243 69.1
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 4.9e-93 345.1 273 63.0
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 8.4e-93 344.4 291 60.1
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.1e-92 344.0 260 66.9
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.4e-92 343.6 276 62.0
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.9e-92 343.2 297 59.9
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.9e-92 343.2 237 68.8
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 3.2e-92 342.4 273 63.0
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 5.5e-92 341.7 250 66.8
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 7.1e-92 341.3 227 74.0
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 9.3e-92 340.9 246 69.5
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 2.1e-91 339.7 287 59.9
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 2.7e-91 339.3 249 66.7
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 3.5e-91 339.0 280 60.7
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.5e-89 333.6 288 59.7
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 2.8e-88 329.3 288 59.4
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 2.8e-88 329.3 289 59.2
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 1.4e-87 327.0 289 59.2
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 3.1e-87 325.9 228 68.9
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-86 323.6 275 62.5
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 4.5e-86 322.0 272 61.4
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 6.5e-85 318.2 264 61.0
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 5.5e-84 315.1 312 55.1
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 2.1e-83 313.2 227 65.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.9e-82 308.9 248 64.5
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 7.4e-81 304.7 269 58.4
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.3e-80 303.9 208 68.8
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.6e-80 303.5 277 58.5
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 3.7e-80 302.4 232 60.8
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 5.3e-79 298.5 239 62.3
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.4e-76 290.4 247 60.3
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.5e-76 289.7 181 76.2
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.2e-76 288.9 171 78.4
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 4.2e-76 288.9 286 56.6
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.6e-75 287.0 276 54.3
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 6.1e-75 285.0 276 54.0
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 5.1e-74 282.0 232 65.5
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 5.7e-73 278.5 226 62.4
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 9.7e-73 277.7 244 56.6
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.7e-72 276.9 275 52.7
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 4.8e-72 275.4 178 74.2
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 4.8e-72 275.4 227 56.8
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.1e-67 260.0 165 72.7
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.6e-67 259.2 191 70.2
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 2.6e-65 253.1 217 56.2
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.7e-64 250.4 166 74.1
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 4.8e-64 248.8 166 71.1
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.1e-52 211.1 200 57.0
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 3.5e-46 189.5 188 52.7
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 7.7e-46 188.3 147 61.2
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.7e-45 187.2 210 44.8
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.2e-40 170.2 141 58.9
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 4.9e-40 169.1 147 55.8
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 8.3e-40 168.3 204 43.1
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 3.1e-39 166.4 173 55.5
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 7.3e-36 155.2 136 55.1
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 9.5e-36 154.8 193 50.8
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.0e-33 147.1 90 74.4
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 7.5e-25 118.6 173 43.4
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.9e-20 104.0 91 54.9
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 7.3e-20 102.1 131 45.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.1e-19 100.5 80 60.0
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-18 95.1 127 44.9
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.1e-11 73.9 119 35.3
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 1.8e-10 70.9 44 65.9
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 6.8e-10 68.9 75 48.0
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 4.9e-08 62.8 87 35.6
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.4e-07 60.5 48 60.4


User provided reference genes

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