Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 0.0e+00 1080.5 547 100.0
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 0.0e+00 1077.4 547 99.6
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.1e-281 971.8 549 88.0
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.3e-274 948.0 550 85.1
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.2e-270 935.3 550 84.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.7e-270 934.5 549 84.2
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 8.3e-270 933.3 525 89.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.9e-269 932.2 568 82.2
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.2e-269 931.4 550 82.9
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.0e-268 927.2 550 82.4
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 3.0e-267 924.9 551 83.3
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.9e-266 922.2 594 78.6
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.5e-266 921.8 554 82.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 3.3e-266 921.4 566 80.4
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.6e-265 919.1 578 80.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.4e-264 916.0 552 83.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 8.9e-264 913.3 573 80.1
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.0e-263 912.1 549 82.3
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.7e-262 909.1 550 81.8
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.9e-261 905.6 551 80.4
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.4e-261 905.2 597 77.2
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 4.1e-261 904.4 556 80.8
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 7.1e-261 903.7 555 79.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.6e-260 902.5 547 80.4
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.1e-260 902.1 546 82.1
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.7e-259 899.0 547 80.3
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 8.6e-259 896.7 547 80.1
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.5e-258 896.0 546 80.8
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.9e-258 895.6 555 79.8
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.5e-258 895.2 565 79.1
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.5e-258 895.2 574 77.9
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 4.3e-258 894.4 550 80.2
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 7.3e-258 893.6 562 79.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.6e-257 892.5 550 80.0
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.8e-256 889.0 550 79.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 3.1e-256 888.3 552 80.4
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 3.1e-256 888.3 547 79.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.4e-255 884.4 550 79.3
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.4e-253 878.6 554 78.5
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 4.2e-253 877.9 577 76.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 9.3e-253 876.7 550 79.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.1e-252 875.5 559 79.1
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.1e-252 875.5 548 79.0
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.6e-252 874.4 559 78.7
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.1e-250 869.8 547 78.4
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 7.3e-250 867.1 549 79.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 2.1e-249 865.5 547 77.9
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 5.3e-248 860.9 491 85.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.5e-247 859.4 596 72.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 4.4e-247 857.8 545 77.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 7.6e-247 857.1 551 76.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 9.9e-247 856.7 587 74.3
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 9.9e-247 856.7 548 77.2
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.3e-246 856.3 555 76.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.7e-246 855.9 535 78.7
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.4e-246 854.0 549 76.7
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.4e-245 852.8 553 76.7
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 7.9e-244 847.0 551 75.9
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.3e-243 846.3 665 67.2
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.7e-243 845.9 551 75.7
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.3e-243 845.5 549 77.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 5.1e-243 844.3 575 74.6
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.5e-242 842.8 551 75.5
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.3e-241 839.7 552 75.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.6e-241 839.3 551 75.0
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 6.0e-236 820.8 562 74.7
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.8e-235 819.3 524 77.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.8e-235 819.3 493 84.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.3e-235 818.9 462 85.9
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.1e-235 817.8 538 77.0
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 3.3e-234 815.1 552 72.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 7.4e-234 813.9 521 78.9
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.3e-233 813.1 549 74.3
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 3.1e-232 808.5 550 74.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 5.3e-232 807.7 547 73.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.5e-231 804.7 609 69.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.0e-230 803.5 550 72.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 4.9e-230 801.2 556 71.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.4e-229 799.7 555 71.5
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 5.5e-229 797.7 550 74.0
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 7.1e-229 797.3 561 70.8
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.4e-223 778.5 596 67.1
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-222 776.2 587 69.0
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 5.0e-222 774.6 545 72.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 4.2e-221 771.5 443 84.7
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 7.2e-221 770.8 483 78.7
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.0e-219 766.9 533 73.0
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.0e-214 750.4 489 74.6
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 6.1e-212 741.1 494 74.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.1e-210 736.9 484 76.0
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.9e-208 727.6 440 80.2
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 2.9e-206 722.2 517 74.9
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.8e-203 713.0 556 67.8
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.1e-202 710.3 531 65.7
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.8e-201 704.9 574 65.2
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.4e-200 702.6 515 67.4
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.5e-191 671.8 449 74.2
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 6.8e-187 657.9 500 62.8
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 6.8e-187 657.9 548 61.1
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.0e-183 646.4 513 63.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 7.7e-183 644.4 469 69.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-181 640.6 548 63.1
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.3e-179 632.9 423 72.8
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.3e-171 606.3 455 70.8
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.2e-170 604.0 343 87.8
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 4.0e-163 578.9 372 81.2
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-157 560.8 486 59.1
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 9.5e-157 557.8 490 58.4
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-154 550.8 322 84.2
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 3.4e-146 522.7 322 79.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 6.0e-143 511.9 293 87.4
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.0e-131 471.5 478 48.7
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 6.2e-124 448.7 271 83.0
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.1e-124 448.4 443 57.6
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 4.9e-113 412.5 259 77.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.8e-108 396.0 402 56.0
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.0e-102 378.3 228 81.1
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.4e-94 351.3 210 79.0
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.0e-94 350.1 205 83.9
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 1.5e-93 347.8 210 80.5
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 2.7e-87 327.0 209 74.2
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.1e-83 313.5 208 72.6
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 5.3e-83 312.8 183 82.5
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 7.7e-74 282.3 472 37.9
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.5e-64 248.8 148 79.1
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 5.0e-57 226.5 139 80.6
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 3.0e-54 217.2 314 46.2
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.1e-51 208.8 431 33.6
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-49 202.2 184 56.0
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 3.0e-41 174.1 361 34.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-40 170.2 89 86.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-40 170.2 89 86.5
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 8.9e-38 162.5 134 60.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.2e-36 157.9 146 59.6
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.9e-33 147.1 114 71.9
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.2e-31 142.1 123 61.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.7e-26 124.4 151 49.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.3e-25 121.3 69 82.6
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 2.5e-24 117.9 66 90.9
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.6e-21 107.8 141 44.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-21 107.1 64 79.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 5.8e-21 106.7 74 75.7
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.9e-20 104.4 57 91.2
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 8.4e-20 102.8 79 62.0
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 3.2e-19 100.9 52 90.4
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 7.1e-19 99.8 119 46.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.7e-17 95.1 106 52.8
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 3.9e-17 94.0 117 44.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.3e-15 89.0 83 55.4
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.4e-13 80.9 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.2e-11 74.3 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 8.7e-09 66.2 46 67.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-08 65.9 51 62.7
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.9e-08 65.1 72 47.2
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 1.6e-07 62.0 132 34.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.8e-07 60.5 51 56.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.2e-07 60.1 43 67.4
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 4.0e-06 57.4 38 71.1
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 5.3e-06 57.0 84 36.9
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 6.9e-06 56.6 84 36.9


User provided reference genes

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