Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-226 789.6 371 100.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.7e-200 701.0 457 77.5
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.2e-189 665.6 455 73.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.6e-185 651.0 457 72.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.6e-182 642.1 452 70.8
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 9.9e-182 640.2 425 73.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.3e-181 639.8 457 70.2
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.8e-181 638.3 457 70.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 3.8e-181 638.3 457 70.2
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.9e-181 637.9 452 70.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.4e-181 637.5 452 70.6
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.4e-181 637.5 455 71.0
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.4e-181 637.1 450 72.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 8.4e-181 637.1 456 70.8
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.2e-180 635.2 443 72.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.2e-180 634.8 458 69.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-180 634.8 457 71.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 7.1e-180 634.0 457 69.4
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.6e-179 632.9 457 70.5
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 2.1e-179 632.5 455 69.5
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.0e-179 630.9 454 68.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 7.8e-179 630.6 452 70.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.0e-178 630.2 453 70.0
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.0e-178 630.2 455 69.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.3e-178 629.8 455 69.2
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.3e-178 629.0 452 70.1
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.3e-178 629.0 452 70.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.0e-178 628.6 455 69.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.0e-178 628.6 457 69.8
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 6.6e-178 627.5 451 69.8
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.7e-178 627.1 452 68.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.1e-177 626.7 452 68.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.5e-177 626.3 450 71.1
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.5e-177 626.3 450 71.1
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.5e-177 625.5 457 69.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.3e-177 624.8 446 70.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 7.3e-177 624.0 452 68.6
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.3e-176 623.2 455 68.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.2e-176 620.9 457 68.5
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.1e-175 620.2 457 68.9
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.4e-175 619.8 455 68.4
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.8e-175 619.4 452 70.1
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-175 619.4 457 68.5
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.8e-175 619.4 455 68.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 6.9e-175 617.5 455 68.6
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 9.0e-175 617.1 455 68.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.4e-174 615.1 455 67.5
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 9.9e-174 613.6 455 67.5
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 9.9e-174 613.6 447 68.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.3e-173 613.2 455 67.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.7e-173 612.8 457 67.6
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.9e-173 612.1 455 67.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 3.8e-173 611.7 455 67.0
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 4.9e-173 611.3 455 67.5
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 4.9e-173 611.3 455 67.7
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.4e-173 610.9 455 67.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.4e-173 610.9 455 67.3
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 8.4e-173 610.5 452 67.5
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 8.4e-173 610.5 451 67.8
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 8.4e-173 610.5 447 68.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.9e-172 609.4 455 67.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.4e-172 609.0 451 67.4
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.4e-172 609.0 455 67.3
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.2e-172 608.6 452 67.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.2e-172 608.6 455 67.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.2e-172 608.2 455 67.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 5.4e-172 607.8 451 67.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.1e-172 607.4 449 68.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.1e-172 607.4 452 66.8
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 7.1e-172 607.4 455 67.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.6e-171 606.3 449 67.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.6e-171 606.3 446 69.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.1e-171 605.9 451 68.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.1e-171 605.9 446 68.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.1e-171 605.9 447 67.8
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.1e-171 605.9 452 67.3
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.7e-171 605.5 455 67.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.7e-171 605.5 444 67.6
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.7e-171 605.5 457 66.3
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 4.6e-171 604.7 455 66.6
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 4.6e-171 604.7 455 67.3
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.3e-170 603.2 455 67.9
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.7e-170 602.8 452 67.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.3e-170 602.4 455 66.6
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.9e-170 601.7 457 67.6
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 5.1e-170 601.3 527 60.2
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 6.6e-170 600.9 451 67.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.1e-169 600.1 447 66.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.9e-169 599.4 455 67.3
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.5e-169 599.0 451 66.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.5e-169 599.0 456 66.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.3e-169 598.2 482 63.9
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 9.6e-169 597.0 456 66.0
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.3e-168 596.7 455 65.9
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.6e-168 596.3 456 66.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-168 596.3 456 66.0
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.6e-168 596.3 456 66.0
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.6e-168 596.3 498 62.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.1e-168 595.9 452 67.7
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.8e-167 592.8 437 67.5
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.4e-167 592.4 473 64.3
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 4.5e-166 588.2 455 64.8
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 6.4e-165 584.3 449 65.5
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.4e-164 583.2 441 67.3
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.3e-162 576.6 455 62.9
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.1e-161 573.5 455 64.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 2.0e-158 562.8 446 65.5
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.8e-157 558.5 453 62.3
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 8.4e-157 557.4 416 67.8
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.2e-156 555.1 452 61.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 5.5e-156 554.7 455 63.1
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.7e-154 547.4 447 63.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 7.4e-153 544.3 449 60.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 4.1e-151 538.5 378 70.9
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 8.4e-149 530.8 383 70.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.5e-148 529.3 452 60.0
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.6e-144 516.5 454 60.6
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 7.2e-140 501.1 392 65.6
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-137 492.7 447 60.9
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-136 490.3 381 65.1
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.1e-123 444.9 337 67.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.7e-112 410.2 221 86.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 7.2e-108 394.8 436 53.0
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.8e-106 390.2 226 81.9
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 8.3e-104 381.3 410 52.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.6e-100 368.6 355 55.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 7.0e-95 351.7 320 56.6
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 6.0e-86 322.0 288 57.6
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.3e-77 293.5 158 84.2
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.2e-71 271.6 294 50.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.5e-65 254.2 145 76.6
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 2.0e-65 253.8 193 65.8
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.5e-62 243.0 146 76.0
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.9e-60 237.3 158 70.9
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.6e-60 235.0 387 39.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-58 230.7 149 73.2
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.0e-58 229.6 154 66.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 3.4e-57 226.5 148 72.3
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.8e-57 225.7 158 65.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 5.8e-49 199.1 108 85.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.6e-46 189.5 135 68.1
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-42 177.6 259 39.8
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.9e-39 167.5 120 65.8
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.1e-35 154.1 118 64.4
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 5.0e-32 142.9 101 69.3
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-27 127.9 72 81.9
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.2e-23 113.2 55 90.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.1e-14 84.3 66 65.2
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-13 81.3 78 57.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.5e-12 78.2 76 57.9
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 6.3e-11 72.8 66 56.1
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 8.2e-11 72.4 80 48.8
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-09 68.6 68 54.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.6e-09 67.4 34 82.4
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 2.6e-09 67.4 72 52.8
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.7e-09 65.9 36 80.6
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.0e-08 63.2 83 42.2
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 6.5e-08 62.8 187 27.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.1e-07 62.0 35 74.3


User provided reference genes

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