Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 1.2e-88 329.7 156 100.0
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.1e-68 263.5 151 78.8
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.8e-68 262.7 152 79.6
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.4e-68 262.3 151 77.5
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.4e-68 262.3 155 78.1
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.5e-67 259.6 151 80.1
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.0e-67 259.2 150 78.0
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 5.8e-67 257.7 150 78.7
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.6e-67 257.3 155 77.4
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 9.9e-67 256.9 153 76.5
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 6.4e-66 254.2 156 76.9
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 1.1e-65 253.4 151 74.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.1e-65 253.4 156 76.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.4e-65 252.3 151 74.8
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 5.4e-65 251.1 155 71.6
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.2e-64 250.0 150 78.0
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 1.2e-64 250.0 156 75.6
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 2.1e-64 249.2 156 75.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 3.5e-64 248.4 155 74.8
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 6.0e-64 247.7 149 75.2
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.3e-63 246.5 158 72.2
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 3.9e-63 245.0 148 78.4
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 5.1e-63 244.6 154 74.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.1e-62 243.4 155 74.2
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.9e-62 242.7 153 70.6
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.9e-62 242.7 154 73.4
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.9e-62 242.7 154 73.4
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 6.2e-61 237.7 150 73.3
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.1e-60 236.9 150 74.7
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 9.0e-60 233.8 148 73.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.9e-58 228.8 149 69.1
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 3.8e-58 228.4 156 67.9
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 8.4e-58 227.3 149 70.5
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.4e-57 226.5 149 69.8
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.4e-57 225.7 149 68.5
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 3.2e-57 225.3 149 69.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.2e-57 225.3 149 69.8
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 7.1e-57 224.2 118 86.4
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.1e-57 224.2 149 69.1
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 2.7e-56 222.2 149 67.8
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 2.7e-56 222.2 158 65.8
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 5.1e-55 218.0 149 67.8
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.1e-54 216.9 149 67.8
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.5e-54 216.5 152 67.8
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.9e-54 216.1 150 69.3
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 2.5e-54 215.7 149 64.4
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.5e-54 215.7 153 63.4
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.5e-54 215.7 153 63.4
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.3e-53 213.4 150 64.7
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.6e-53 213.0 150 65.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.8e-53 212.2 154 64.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.7e-53 211.8 151 66.9
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 3.7e-53 211.8 151 66.9
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.7e-53 211.8 153 66.7
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 4.8e-53 211.5 149 63.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 8.1e-53 210.7 156 64.7
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 8.1e-53 210.7 151 66.9
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.4e-52 209.9 151 66.2
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.4e-52 209.9 151 66.2
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.5e-51 206.5 151 64.9
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.5e-51 206.5 150 67.3
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 3.4e-51 205.3 156 64.1
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 5.8e-51 204.5 151 64.2
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.7e-50 203.0 152 63.8
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 2.2e-50 202.6 151 63.6
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 3.8e-50 201.8 149 60.4
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.4e-49 199.9 154 61.0
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 5.5e-49 198.0 149 59.1
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.7e-48 195.7 148 61.5
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 3.5e-48 195.3 151 62.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 3.5e-48 195.3 151 62.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 6.0e-48 194.5 127 71.7
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 2.3e-47 192.6 150 60.7
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.9e-46 189.5 112 75.9
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 3.7e-45 185.3 121 71.1
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 3.7e-45 185.3 150 60.7
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.2e-42 176.0 158 57.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 5.5e-41 171.4 124 66.1
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.2e-32 143.7 102 69.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.7e-32 142.5 139 48.2
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 3.8e-26 122.1 98 66.3
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 5.1e-23 111.7 150 41.3
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 2.0e-22 109.8 150 40.0
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.2e-16 90.5 54 77.8
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.9e-15 85.5 60 60.0
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.1e-14 84.0 83 51.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 2.7e-08 62.8 84 39.3


User provided reference genes

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