Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 0.0e+00 1228.4 625 100.0
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 8.3e-266 920.2 622 76.2
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 7.6e-235 817.4 656 66.3
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 6.5e-226 787.7 628 66.6
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.0e-223 780.4 627 64.8
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 1.5e-219 766.5 623 63.9
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 1.2e-216 756.9 627 64.6
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 7.4e-214 747.7 557 70.0
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 1.9e-209 733.0 627 63.6
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 6.1e-208 728.0 599 63.3
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 7.9e-208 727.6 600 63.7
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 2.6e-203 712.6 640 59.7
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 5.9e-203 711.4 630 61.3
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 2.2e-202 709.5 625 58.9
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 2.9e-202 709.1 626 59.3
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 6.5e-202 708.0 626 59.7
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.1e-201 707.2 625 59.2
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 4.7e-200 701.8 618 58.7
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.4e-199 700.3 627 58.9
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 6.7e-199 698.0 626 58.1
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 1.5e-198 696.8 586 61.8
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 3.7e-197 692.2 625 58.1
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 8.2e-197 691.0 626 57.7
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 7.7e-195 684.5 617 60.0
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.0e-194 681.8 631 59.0
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 9.4e-193 677.6 630 58.4
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 2.1e-192 676.4 579 61.8
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 2.2e-189 666.4 616 57.8
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 1.3e-186 657.1 629 55.6
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 1.1e-185 654.1 622 56.3
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 1.5e-185 653.7 625 55.8
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 4.2e-185 652.1 629 56.6
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.5e-185 651.7 581 58.3
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 7.2e-185 651.4 588 58.2
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 6.1e-184 648.3 602 56.3
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.7e-182 641.7 586 58.0
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 5.7e-182 641.7 583 55.9
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 7.5e-182 641.3 584 56.5
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 2.4e-180 636.3 451 70.5
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 5.4e-180 635.2 628 55.3
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 7.0e-180 634.8 638 55.0
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 7.7e-179 631.3 622 54.0
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 1.0e-178 630.9 600 55.5
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 1.7e-178 630.2 593 55.1
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 2.3e-178 629.8 601 56.2
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 8.6e-178 627.9 601 55.2
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 5.5e-177 625.2 585 55.9
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 5.5e-177 625.2 602 55.6
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 3.6e-176 622.5 585 55.6
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 8.0e-176 621.3 583 55.6
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 1.0e-175 620.9 609 55.0
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 1.8e-175 620.2 551 59.7
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.3e-175 619.8 570 56.7
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 2.3e-175 619.8 664 53.8
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 8.9e-175 617.8 581 55.9
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 8.9e-175 617.8 663 52.9
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 8.9e-175 617.8 588 56.5
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 1.2e-174 617.5 623 53.9
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.0e-174 616.7 621 53.3
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 3.4e-174 615.9 581 57.1
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 7.5e-174 614.8 656 53.4
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 9.8e-174 614.4 610 54.3
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 2.2e-173 613.2 623 53.8
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 3.7e-173 612.5 628 53.0
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.1e-172 610.9 622 53.1
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 1.4e-172 610.5 600 53.5
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.4e-172 609.8 622 52.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 3.1e-172 609.4 581 55.6
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 9.2e-172 607.8 603 54.1
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.2e-171 607.4 609 52.7
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 3.5e-171 605.9 572 56.8
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 2.3e-170 603.2 704 48.7
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.9e-169 600.1 572 56.5
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 2.0e-166 590.1 704 48.2
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.7e-162 577.0 692 47.4
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.5e-158 563.9 432 69.4
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 3.9e-154 549.3 629 49.4
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 4.7e-152 542.3 635 47.4
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.1e-151 539.7 561 52.6
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 3.7e-149 532.7 630 49.7
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.6e-147 527.3 408 68.1
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 3.6e-144 516.2 595 48.4
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.8e-143 513.8 442 62.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.1e-143 513.1 600 48.0
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 2.0e-142 510.4 421 59.4
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 9.9e-142 508.1 492 55.7
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 2.1e-139 500.4 622 48.7
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.3e-133 481.1 421 58.0
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 2.5e-129 466.8 489 53.4
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.1e-127 461.5 459 54.9
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 1.4e-127 461.1 436 56.2
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 2.4e-127 460.3 632 45.6
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 4.9e-125 452.6 603 45.4
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 5.1e-122 442.6 497 49.7
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 5.3e-119 432.6 489 51.9
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.3e-117 427.9 417 55.9
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 2.7e-115 420.2 424 53.5
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 5.6e-113 412.5 419 53.5
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.6e-107 392.9 636 39.5
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.1e-100 371.7 583 39.3
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.4e-92 344.7 579 38.2
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 1.1e-81 308.5 295 55.9
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.5e-68 263.1 280 52.5
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 1.3e-64 251.9 594 29.5
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.2e-64 251.1 234 54.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 4.9e-56 223.4 212 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 1.2e-49 202.2 604 29.3
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.7e-48 198.4 201 51.7
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 1.8e-34 151.8 159 49.7
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 4.0e-34 150.6 219 40.6
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 2.6e-33 147.9 301 36.5
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.1e-31 139.8 209 39.7
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.4e-23 114.8 95 68.4
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 1.1e-18 99.4 321 29.3
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 1.3e-16 92.4 93 55.9
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.9e-16 90.5 125 45.6
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 6.4e-16 90.1 176 38.1
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.2e-14 85.9 66 66.7
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 8.7e-13 79.7 67 64.2
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 4.5e-09 67.4 87 47.1
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 9.9e-09 66.2 49 65.3
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 9.9e-09 66.2 70 52.9
CAN.G404.26 Capsicum annuum HOM05D006452 ORTHO05D008068 1.4e-07 62.4 59 44.1
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.1e-06 58.5 59 52.5


User provided reference genes

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