Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.5e-74 282.7 139 100.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 8.0e-60 233.8 146 76.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 9.8e-58 226.9 146 71.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 6.3e-57 224.2 147 72.8
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.4e-56 223.0 146 69.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.4e-56 223.0 146 69.2
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.4e-56 222.2 144 71.5
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.4e-56 222.2 143 71.3
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 7.0e-56 220.7 146 72.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.6e-55 219.5 143 72.7
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 2.7e-55 218.8 146 68.5
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.7e-55 218.8 143 70.6
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.7e-54 216.1 141 70.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.7e-54 216.1 146 68.5
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.9e-53 212.6 140 70.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.9e-53 212.6 146 67.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.3e-53 211.5 146 69.9
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 5.6e-53 211.1 143 72.0
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-52 209.5 146 67.1
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.1e-52 209.1 144 68.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.6e-52 208.4 143 67.8
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.0e-51 206.8 143 69.2
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.4e-51 206.5 144 66.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-51 206.5 143 69.2
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 2.3e-51 205.7 140 67.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.3e-51 205.7 141 68.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.0e-51 205.3 146 69.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 5.2e-51 204.5 140 69.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 6.8e-51 204.1 146 68.5
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 8.9e-51 203.8 140 67.1
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.5e-50 203.0 138 66.7
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.6e-50 202.2 145 66.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.4e-50 201.4 143 65.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.7e-50 201.1 141 68.1
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 5.7e-50 201.1 141 68.1
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.5e-50 200.7 142 65.5
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 9.8e-50 200.3 145 65.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.3e-49 199.9 141 65.2
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-49 199.9 141 65.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.7e-49 199.5 141 66.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.7e-49 199.5 143 68.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.7e-49 198.4 140 67.9
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 3.7e-49 198.4 143 64.3
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.7e-49 198.4 141 67.4
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.9e-49 198.0 143 62.2
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 4.9e-49 198.0 144 64.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.9e-49 198.0 144 68.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 6.4e-49 197.6 143 62.9
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 8.3e-49 197.2 146 63.7
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.3e-49 197.2 146 64.4
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 8.3e-49 197.2 146 63.0
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-48 196.8 146 65.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 67.1
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 67.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-48 196.8 143 67.8
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 64.3
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.4e-48 196.4 136 66.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.8e-48 196.1 140 65.0
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.4e-48 195.7 146 62.3
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-48 194.9 146 64.4
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.1e-48 194.9 143 62.9
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 5.4e-48 194.5 143 62.9
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 9.2e-48 193.7 143 62.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-47 193.4 146 63.7
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-47 193.4 143 62.2
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-47 193.4 143 62.2
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-47 193.4 143 62.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.2e-47 193.4 145 65.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.6e-47 193.0 143 62.2
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-47 193.0 130 69.2
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.6e-47 193.0 144 66.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.0e-47 192.6 142 62.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.7e-47 192.2 140 64.3
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.5e-47 191.8 143 61.5
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.6e-47 191.4 171 56.1
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 4.6e-47 191.4 146 62.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 4.6e-47 191.4 143 63.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.9e-47 191.0 134 64.2
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 5.9e-47 191.0 143 63.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.0e-46 190.3 138 65.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.0e-46 190.3 143 62.9
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.3e-46 189.1 142 64.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.3e-46 189.1 143 65.0
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.0e-46 188.7 138 65.2
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.0e-46 188.7 138 65.2
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.0e-46 188.7 138 64.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 8.6e-46 187.2 148 60.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-45 186.4 165 58.2
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.5e-45 186.4 138 63.0
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.5e-45 185.7 147 63.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.5e-45 185.7 138 63.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 4.3e-45 184.9 142 62.0
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.2e-44 183.3 136 64.7
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.6e-44 183.0 159 56.0
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-44 183.0 145 60.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-44 183.0 145 60.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.8e-44 182.2 121 69.4
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.7e-44 181.4 143 59.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 4.7e-44 181.4 146 58.9
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 4.7e-44 181.4 144 59.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 6.2e-44 181.0 140 60.0
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.0e-43 180.3 140 59.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.0e-43 180.3 117 70.9
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-43 179.9 121 66.1
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.4e-43 179.9 139 60.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-43 179.9 144 60.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.8e-43 179.5 136 61.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.8e-43 179.5 122 66.4
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.3e-43 179.1 138 60.9
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 3.1e-43 178.7 121 69.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 4.0e-43 178.3 140 61.4
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 6.8e-43 177.6 121 67.8
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 8.9e-43 177.2 140 60.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.5e-42 176.4 140 59.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.6e-42 175.6 146 58.9
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 7.5e-42 174.1 146 55.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 6.4e-41 171.0 141 60.3
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 8.3e-41 170.6 147 56.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.2e-40 168.7 147 57.1
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 9.2e-40 167.2 145 55.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.6e-39 166.4 143 53.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.5e-39 165.2 111 68.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.3e-38 162.5 143 54.5
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.9e-38 161.8 117 64.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 3.9e-38 161.8 117 64.1
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.0e-38 161.4 141 56.7
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.1e-37 160.2 210 44.3
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 4.3e-37 158.3 115 62.6
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 5.6e-37 157.9 133 56.4
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-34 149.8 141 52.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.4e-32 142.5 114 56.1
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 9.2e-32 140.6 112 58.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.2e-31 140.2 134 50.7
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-31 139.8 99 64.6
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.0e-30 137.1 125 52.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.0e-30 137.1 125 52.0
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.4e-24 115.9 85 63.5
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.6e-23 111.7 127 45.7
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 4.3e-21 105.1 138 42.0
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 4.3e-21 105.1 99 51.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 9.6e-21 104.0 99 52.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.8e-19 99.8 131 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.1e-19 99.0 131 41.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 4.0e-19 98.6 137 40.9
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.8e-19 97.8 127 41.7
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-18 95.5 108 43.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.3e-17 93.6 126 41.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 4.9e-17 91.7 83 50.6
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 9.3e-16 87.4 139 36.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.1e-15 86.3 141 36.9
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 6.0e-15 84.7 73 57.5
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-14 84.0 68 57.4
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-14 84.0 68 57.4
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.0e-14 84.0 95 45.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 3.0e-14 82.4 68 55.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.3e-13 77.8 143 32.9
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 5.3e-11 71.6 112 38.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 5.3e-11 71.6 49 63.3
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.8e-10 68.2 58 60.3
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 9.9e-10 67.4 83 48.2
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.3e-09 67.0 51 54.9
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.3e-09 67.0 51 54.9
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 8.4e-09 64.3 83 43.4
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 1.6e-07 60.1 39 74.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.0e-06 57.4 133 27.8
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.3e-06 57.0 35 68.6
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 6.6e-06 54.7 41 48.8


User provided reference genes

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