Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041486 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.9e-87 323.6 162 100.0
CSS0030035 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.5e-65 252.3 130 95.4
CSS0002615 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.3e-55 218.0 139 80.6
CSS0025043 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-53 213.8 137 80.3
CSS0035626 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.8e-42 176.4 111 81.1
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.9e-42 175.3 110 81.8
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.9e-42 175.3 110 81.8
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.5e-41 172.6 110 80.9
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.4e-39 166.8 110 78.2
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 4.2e-36 155.2 110 69.1
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 2.1e-35 152.9 110 70.0
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.4e-34 150.2 110 69.1
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.4e-34 150.2 110 69.1
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 2.3e-34 149.4 110 68.2
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 1.5e-33 146.7 111 68.5
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 7.4e-33 144.4 110 67.3
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 9.7e-33 144.1 110 66.4
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.7e-32 143.3 110 67.3
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 2.2e-32 142.9 110 65.5
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 3.7e-32 142.1 110 65.5
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 4.8e-32 141.7 110 67.3
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.1e-31 140.6 110 66.4
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 1.4e-31 140.2 110 66.4
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 1.4e-31 140.2 110 67.3
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.8e-31 139.8 110 66.4
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.3e-31 138.3 139 55.4
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 5.3e-31 138.3 110 66.4
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 5.3e-31 138.3 110 62.7
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 7.0e-31 137.9 110 64.5
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 9.1e-31 137.5 110 64.5
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.2e-30 137.1 110 63.6
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 1.6e-30 136.7 110 63.6
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.6e-30 136.7 118 60.2
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 3.5e-30 135.6 110 62.7
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 4.5e-30 135.2 110 64.5
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.5e-30 135.2 110 64.5
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 4.5e-30 135.2 110 62.7
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.9e-30 134.8 110 63.6
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 5.9e-30 134.8 110 62.7
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 1.3e-29 133.7 110 60.9
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 1.3e-29 133.7 110 59.1
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 1.3e-29 133.7 118 59.3
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.7e-29 133.3 110 62.7
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 3.8e-29 132.1 110 60.9
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 1.1e-28 130.6 110 59.1
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 1.1e-28 130.6 110 62.7
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.5e-28 130.2 110 61.8
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.9e-28 129.8 112 58.9
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 1.9e-28 129.8 118 55.1
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.9e-28 129.8 110 60.9
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.2e-28 129.0 112 58.0
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.2e-28 129.0 110 64.5
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.2e-28 128.6 110 58.2
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 5.5e-28 128.3 110 60.9
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 5.5e-28 128.3 110 59.1
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 7.2e-28 127.9 109 55.0
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 9.4e-28 127.5 110 60.0
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 9.4e-28 127.5 110 57.3
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 1.2e-27 127.1 110 61.8
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 1.2e-27 127.1 110 60.9
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 2.1e-27 126.3 113 61.1
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 3.6e-27 125.6 111 57.7
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 6.1e-27 124.8 110 58.2
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.0e-26 124.0 110 59.1
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 1.4e-26 123.6 130 52.3
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.8e-26 123.2 107 56.1
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 1.8e-26 123.2 110 58.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.3e-26 122.9 110 60.0
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 3.0e-26 122.5 110 59.1
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 3.0e-26 122.5 110 61.8
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 4.0e-26 122.1 110 58.2
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 4.0e-26 122.1 110 59.1
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 5.2e-26 121.7 110 60.0
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 8.8e-26 120.9 120 51.7
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 8.8e-26 120.9 109 54.1
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.1e-25 120.6 110 57.3
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 1.5e-25 120.2 110 58.2
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 2.0e-25 119.8 110 60.0
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.6e-25 119.4 110 58.2
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 2.6e-25 119.4 110 58.2
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 3.3e-25 119.0 110 56.4
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 5.7e-25 118.2 110 58.2
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 5.7e-25 118.2 110 58.2
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 9.7e-25 117.5 110 57.3
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 9.7e-25 117.5 110 60.9
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 9.7e-25 117.5 111 55.9
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 1.3e-24 117.1 109 52.3
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.3e-24 117.1 110 58.2
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.7e-24 116.7 110 54.5
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 4.8e-24 115.2 110 55.5
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 8.2e-24 114.4 130 50.8
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 3.1e-23 112.5 110 55.5
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 1.2e-22 110.5 110 55.5
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.2e-22 110.5 132 42.4
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 1.6e-22 110.2 110 50.9
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.0e-21 107.5 111 54.1
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.0e-21 107.5 110 52.7
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.2e-21 106.3 105 50.5
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 5.0e-21 105.1 110 51.8
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 6.5e-21 104.8 110 51.8
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 9.4e-20 100.9 110 50.9
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 1.6e-19 100.1 107 50.5
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 2.1e-19 99.8 110 50.9
Sopen01g017590 Solanum pennellii HOM05D003515 ORTHO05D004347 2.7e-19 99.4 92 58.7
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 6.1e-19 98.2 109 49.5
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 6.8e-18 94.7 74 63.5
arahy.Tifrunner.gnm1.ann1.E07S37 Arachis hypogaea HOM05D003509 ORTHO05D001340 4.4e-17 92.0 70 62.9
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 9.8e-17 90.9 104 46.2
Phvul.007G100966 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 2.8e-16 89.4 81 55.6
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 5.4e-15 85.1 111 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 5.5e-12 75.1 116 39.7
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 7.2e-12 74.7 115 36.5
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.5e-09 67.0 118 34.7
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 6.3e-08 61.6 112 40.2


User provided reference genes

Program Settings