Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 7.7e-245 850.1 452 100.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.0e-192 676.0 453 82.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.0e-192 676.0 455 80.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 9.8e-192 673.7 439 82.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.8e-189 664.1 453 81.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.7e-188 662.9 448 80.4
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.0e-188 662.1 446 79.1
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.3e-187 658.7 441 81.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.3e-187 658.3 450 78.7
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 5.6e-187 657.9 448 79.9
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.8e-185 652.9 418 83.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 6.8e-185 651.0 452 79.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.9e-185 650.6 453 79.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.6e-184 649.0 481 75.1
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.9e-184 647.1 406 85.2
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.3e-183 646.7 464 78.4
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.1e-182 643.7 443 79.7
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.4e-182 643.3 446 79.6
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-182 643.3 454 77.8
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.4e-182 643.3 448 79.2
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-182 642.5 446 80.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.2e-182 642.1 429 81.4
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 9.2e-182 640.6 451 77.2
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 9.2e-182 640.6 445 79.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.6e-181 639.8 446 77.6
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.1e-181 639.4 457 77.0
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.5e-181 638.6 447 78.7
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 3.5e-181 638.6 439 78.8
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.8e-181 637.5 447 78.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 7.8e-181 637.5 447 78.3
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 8.6e-180 634.0 481 75.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.9e-179 632.9 444 77.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.3e-179 632.1 447 77.6
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 3.3e-179 632.1 447 77.6
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 3.3e-179 632.1 402 83.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 7.3e-179 630.9 440 78.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-178 630.2 448 77.7
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.2e-178 630.2 437 78.3
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.6e-178 629.8 424 78.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.1e-178 629.4 409 82.9
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.8e-178 629.0 418 80.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.6e-178 628.6 407 83.3
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 6.2e-178 627.9 446 76.5
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.1e-177 627.1 455 75.8
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.1e-177 627.1 411 81.0
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 4.0e-177 625.2 447 76.1
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.2e-177 624.8 448 76.8
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 5.2e-177 624.8 447 75.8
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 6.8e-177 624.4 448 76.8
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 8.9e-177 624.0 460 76.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.0e-176 622.9 447 75.4
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.6e-176 622.5 443 76.5
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 3.4e-176 622.1 407 82.1
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 4.4e-176 621.7 407 80.6
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.3e-175 620.2 464 73.7
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.7e-175 619.8 415 80.5
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.7e-175 619.8 489 71.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.2e-175 619.4 407 82.1
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.9e-175 619.0 438 78.1
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.9e-175 618.2 444 75.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.9e-175 618.2 454 75.3
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.4e-174 615.9 455 75.6
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.4e-174 615.9 447 74.9
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.2e-174 615.5 433 76.7
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 4.1e-174 615.1 462 75.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 5.4e-174 614.8 421 80.0
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.4e-174 614.8 441 75.3
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.2e-173 613.6 456 74.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.5e-173 612.1 440 77.5
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 3.5e-173 612.1 405 82.0
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.5e-173 612.1 383 83.6
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 7.8e-173 610.9 455 73.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 7.8e-173 610.9 452 75.0
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-172 610.5 457 73.3
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.0e-172 610.5 455 73.6
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.0e-172 610.5 441 76.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.0e-172 609.0 455 73.8
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.0e-172 609.0 455 73.8
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.1e-171 607.1 410 79.5
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.9e-171 606.3 455 74.5
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 3.3e-171 605.5 443 75.2
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 4.3e-171 605.1 403 79.7
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.6e-170 603.2 363 86.5
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 6.2e-170 601.3 455 73.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.4e-169 600.1 452 73.2
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-169 600.1 403 78.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.4e-169 599.4 455 73.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 4.0e-169 598.6 455 73.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.5e-168 596.7 452 73.2
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.0e-168 596.3 408 77.7
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 4.4e-168 595.1 407 76.9
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.3e-167 593.6 402 77.4
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 2.2e-167 592.8 454 72.0
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 6.4e-167 591.3 361 85.3
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 7.1e-166 587.8 463 72.8
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 3.9e-164 582.0 407 75.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.1e-163 580.5 409 77.8
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.6e-163 578.2 478 69.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.6e-162 575.5 367 79.8
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.6e-160 569.3 367 79.8
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 2.9e-159 565.8 375 80.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 4.6e-157 558.5 351 83.2
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.3e-156 557.0 368 81.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.0e-152 543.1 446 68.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.4e-152 542.3 367 77.9
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.9e-151 539.3 361 76.2
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.9e-150 536.6 439 68.8
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 6.7e-148 528.1 407 69.3
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.5e-147 526.9 305 90.8
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.9e-147 526.6 386 71.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.8e-146 521.9 308 88.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.0e-144 516.5 422 65.4
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 5.8e-144 515.0 308 86.4
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 7.6e-144 514.6 420 67.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.6e-144 514.6 320 84.7
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.5e-142 509.6 378 74.3
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.9e-141 504.6 412 69.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 8.7e-140 501.1 602 52.3
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.7e-140 501.1 452 62.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.0e-135 487.6 312 84.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.7e-133 479.6 298 83.2
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 2.0e-128 463.4 313 76.0
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.9e-127 459.5 310 77.4
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 8.5e-127 458.0 309 77.0
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.5e-126 455.3 266 89.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.1e-124 448.7 307 76.2
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.1e-121 439.1 307 74.3
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.5e-120 435.6 268 84.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.0e-119 434.5 267 83.9
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.3e-119 434.1 451 57.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.0e-119 432.2 311 71.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.5e-107 394.0 325 68.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.4e-92 344.4 240 73.3
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 5.9e-88 328.9 327 60.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 4.7e-85 319.3 186 87.6
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.1e-81 306.2 439 42.6
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.4e-75 286.6 213 68.5
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 9.8e-75 285.0 170 84.1
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.5e-67 261.2 215 68.8
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 9.9e-67 258.5 231 61.5
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.0e-63 246.9 145 85.5
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.4e-57 226.1 129 89.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 6.9e-52 209.1 132 80.3
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 9.0e-52 208.8 193 56.5
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.4e-50 202.2 169 63.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.2e-45 186.0 192 58.3
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 8.1e-45 185.7 119 82.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.2e-33 146.7 175 50.3
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.7e-32 144.1 184 51.1
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.0e-31 142.1 110 73.6
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.3e-30 136.7 383 34.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.8e-28 131.3 101 73.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 8.4e-26 122.5 69 91.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 7.1e-25 119.4 78 79.5
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-22 112.1 108 57.4
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.8e-20 104.8 131 51.1
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.0e-19 101.3 61 86.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.6e-19 100.9 59 86.4
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.3e-14 84.0 53 83.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.4e-12 77.8 141 36.2
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.9e-11 73.2 58 65.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.4e-09 68.6 47 72.3
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 9.4e-09 65.9 93 50.5
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 8.8e-07 59.3 58 51.7
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.1e-06 58.9 59 52.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 7.4e-06 56.2 39 74.4


User provided reference genes

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