Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 0.0e+00 1161.7 597 100.0
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.3e-263 912.9 601 77.9
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.9e-215 752.3 659 61.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.5e-203 712.6 607 63.1
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.6e-203 710.7 640 61.6
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.0e-200 703.0 620 64.0
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.1e-195 687.2 597 60.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 7.4e-187 657.9 601 59.6
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 4.8e-186 655.2 616 59.4
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 4.5e-184 648.7 615 59.0
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.2e-181 640.6 601 56.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 5.1e-180 635.2 596 56.0
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.8e-178 628.6 601 56.9
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 4.1e-177 625.5 682 54.5
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 9.0e-177 624.4 602 56.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.2e-176 624.0 600 56.7
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.4e-174 617.1 603 55.9
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 4.2e-174 615.5 603 57.7
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.5e-174 615.1 598 56.5
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.7e-173 612.8 631 56.4
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.7e-173 612.8 593 53.1
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.6e-173 612.1 599 55.1
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.3e-172 609.8 598 54.5
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.5e-171 607.1 607 58.0
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 5.7e-171 605.1 679 52.6
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 6.3e-170 601.7 609 57.1
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 4.1e-169 599.0 607 54.7
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 9.1e-169 597.8 622 58.5
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.4e-168 595.9 662 53.3
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.4e-168 595.9 606 53.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.9e-167 592.8 635 55.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 7.2e-166 588.2 624 52.2
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 7.2e-166 588.2 599 52.3
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.7e-165 585.5 498 60.0
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.0e-164 584.3 617 52.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 6.7e-164 581.6 632 52.2
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.7e-162 577.0 622 53.2
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.8e-162 576.2 624 53.0
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 6.3e-162 575.1 601 53.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.8e-161 573.5 594 54.2
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 5.9e-160 568.5 589 54.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.3e-159 567.4 504 60.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-158 564.3 490 59.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.6e-157 560.5 604 52.2
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.7e-157 559.7 596 51.2
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.7e-157 559.7 599 53.1
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 3.0e-156 556.2 595 54.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.6e-155 553.1 595 51.6
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 4.8e-154 548.9 601 51.2
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.4e-153 547.4 603 52.9
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 7.0e-153 545.0 609 48.6
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.6e-152 543.1 609 53.2
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 3.5e-152 542.7 603 49.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.0e-151 541.2 617 49.6
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 6.5e-151 538.5 595 48.2
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.5e-150 536.6 602 49.7
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.5e-150 535.4 609 48.9
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.6e-149 532.7 617 50.6
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.4e-148 530.8 603 48.8
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.8e-148 530.4 606 49.5
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 6.7e-148 528.5 629 51.7
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.7e-148 528.5 629 51.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.0e-147 526.9 599 49.4
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 3.3e-147 526.2 489 56.9
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 4.4e-147 525.8 432 59.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.7e-147 524.6 591 50.1
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.7e-146 523.9 607 48.6
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.8e-146 523.1 589 50.9
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.8e-146 523.1 665 46.2
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.7e-146 522.7 590 48.1
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.8e-146 522.3 628 47.0
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.1e-145 521.2 604 46.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.2e-144 517.7 589 47.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.6e-144 517.3 587 47.4
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.7e-144 516.5 483 56.9
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.2e-143 513.5 593 48.7
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.2e-142 509.2 613 46.5
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.2e-141 507.7 611 45.5
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.6e-141 507.3 611 45.3
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.7e-141 505.8 591 48.9
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-140 504.6 597 46.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-140 504.2 601 48.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.4e-140 504.2 433 63.5
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 3.0e-140 503.1 593 50.3
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 8.8e-140 501.5 602 46.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.8e-138 495.7 602 48.7
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-137 494.6 490 54.7
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.4e-137 493.4 592 48.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.1e-137 492.7 503 52.1
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-135 488.0 597 48.2
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.3e-135 486.9 493 51.7
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 8.6e-135 485.0 601 48.4
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.9e-134 483.8 511 50.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.4e-129 467.6 598 49.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.4e-129 466.8 502 50.4
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-129 466.5 590 44.6
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-125 454.5 596 44.0
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 4.7e-125 452.6 605 44.6
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 4.9e-122 442.6 588 44.9
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 2.6e-115 420.2 363 60.9
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.2e-113 413.3 483 49.5
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.9e-111 406.4 506 50.8
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 8.6e-111 405.2 603 41.8
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 8.1e-109 398.7 692 40.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.3e-108 397.1 623 42.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 8.9e-108 395.2 614 41.2
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.0e-104 382.5 354 57.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.8e-100 370.9 334 57.8
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-97 360.1 183 96.7
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 9.2e-97 358.6 431 48.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-96 356.7 183 96.2
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 6.0e-96 355.9 354 49.4
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-95 354.8 183 95.1
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.0e-95 353.6 183 95.6
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.0e-95 353.6 183 95.6
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.0e-95 353.6 183 95.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 8.7e-95 352.1 483 40.0
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-92 345.1 345 52.8
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.4e-92 344.0 265 65.7
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 3.2e-89 333.6 454 40.5
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.2e-88 331.6 470 39.8
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.1e-86 325.1 267 64.4
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.6e-83 313.9 183 86.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.1e-81 308.5 257 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.9e-76 289.3 500 36.2
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.9e-76 289.3 183 82.5
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.9e-73 281.2 311 52.1
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.5e-73 280.8 265 54.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 4.6e-72 276.6 266 54.9
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 3.1e-68 263.8 262 56.5
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 4.5e-67 260.0 331 48.3
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 5.5e-65 253.1 286 50.7
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 6.0e-64 249.6 405 42.0
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.8e-63 248.1 334 41.3
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.7e-63 246.1 258 51.2
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.9e-62 244.6 327 42.8
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.3e-62 243.4 264 60.6
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 7.4e-62 242.7 297 47.8
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-61 241.9 158 70.3
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 3.6e-56 223.8 132 73.5
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 3.6e-56 223.8 184 62.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.3e-55 221.1 265 41.5
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.0e-47 194.1 372 34.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.6e-46 191.0 252 45.6
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 4.1e-44 183.7 239 53.1
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 8.0e-40 169.5 214 45.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 7.4e-38 162.9 184 50.5
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 3.8e-34 150.6 621 24.2
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 5.0e-34 150.2 121 63.6
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.1e-32 144.8 233 48.1
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.4e-31 142.1 195 43.1
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.4e-30 137.1 235 38.7
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.0e-28 129.8 103 61.2
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 7.0e-28 129.8 165 44.2
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.5e-27 127.1 103 60.2
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 5.9e-27 126.7 97 61.9
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 5.0e-26 123.6 194 59.3
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 8.5e-26 122.9 166 50.6
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.7e-24 117.1 243 34.2
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.3e-21 106.7 125 42.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.4e-20 105.5 274 39.1
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 4.1e-20 104.0 136 64.7
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 7.0e-20 103.2 151 40.4
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.5e-17 94.7 195 46.2
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.3e-17 94.4 83 55.4
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-16 91.7 79 58.2
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.6e-16 90.9 82 53.7
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.1e-16 90.1 69 55.1
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 5.2e-15 87.0 74 62.2
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.4e-12 79.0 45 77.8
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 4.1e-12 77.4 78 53.8
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.1e-08 65.1 45 66.7
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.6e-08 64.3 47 59.6
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 4.7e-08 63.9 161 49.1
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.8e-07 62.0 133 38.3


User provided reference genes

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