Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.8e-43 177.2 91 100.0
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 3.1e-28 128.3 88 71.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.1e-25 119.8 77 68.8
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.5e-22 108.6 76 67.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.7e-21 104.8 77 71.4
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.7e-21 104.8 77 71.4
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.3e-20 100.9 78 66.7
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 9.0e-20 100.1 72 65.3
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.0e-20 100.1 72 65.3
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 3.4e-19 98.2 85 61.2
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 4.5e-19 97.8 84 61.9
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.0e-18 96.7 77 62.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 1.3e-18 96.3 70 70.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.7e-18 95.9 78 60.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.7e-18 95.9 70 68.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.2e-18 95.5 90 53.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.9e-18 95.1 91 59.3
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.8e-18 94.7 92 58.7
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 5.0e-18 94.4 83 59.0
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.5e-18 94.0 83 60.2
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 8.5e-18 93.6 84 60.7
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.5e-17 92.0 90 54.4
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.2e-17 90.5 78 60.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 7.2e-17 90.5 78 56.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-16 89.7 83 57.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-16 89.7 83 57.8
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.2e-16 89.7 80 57.5
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.6e-16 89.4 83 57.8
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.1e-16 89.0 85 54.1
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-16 88.2 85 57.6
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-16 88.2 85 57.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.6e-16 87.8 71 64.8
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.9e-16 87.0 78 56.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.9e-16 87.0 78 56.4
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 7.9e-16 87.0 70 60.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.0e-15 86.7 88 55.7
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.0e-15 86.7 70 58.6
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.8e-15 85.9 78 56.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.8e-15 85.9 88 54.5
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.3e-15 85.5 71 62.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.0e-15 85.1 78 56.4
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 3.9e-15 84.7 69 65.2
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 3.9e-15 84.7 70 58.6
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.1e-15 84.3 69 60.9
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 6.7e-15 84.0 71 63.4
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.7e-15 84.0 71 59.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.7e-15 84.0 69 63.8
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 8.8e-15 83.6 92 51.1
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 8.8e-15 83.6 99 48.5
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.5e-14 82.0 83 54.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.3e-14 81.6 84 53.6
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 5.7e-14 80.9 64 62.5
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.4e-14 80.5 62 64.5
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.4e-14 80.5 86 48.8
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.3e-13 79.7 84 56.0
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.3e-13 79.7 84 56.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.7e-13 79.3 63 65.1
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 2.2e-13 79.0 87 51.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.8e-13 78.6 87 51.7
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-13 78.2 77 53.2
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.7e-13 78.2 69 59.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.8e-13 77.8 84 56.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 6.3e-13 77.4 88 52.3
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 6.3e-13 77.4 87 48.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 8.2e-13 77.0 83 56.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 8.2e-13 77.0 86 54.7
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.1e-12 76.6 84 51.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 1.8e-12 75.9 71 56.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 3.1e-12 75.1 88 52.3
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.1e-12 74.7 84 52.4
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.1e-12 74.7 88 50.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.1e-12 74.7 88 50.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 4.1e-12 74.7 88 52.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.3e-12 74.3 88 48.9
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.3e-12 74.3 65 61.5
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.9e-12 73.9 71 54.9
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.9e-12 73.9 71 54.9
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.9e-12 73.9 86 45.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.1e-12 73.6 84 50.0
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.2e-11 73.2 83 53.0
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.2e-11 73.2 86 50.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.5e-11 72.8 71 53.5
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.5e-11 72.8 84 52.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.5e-11 72.8 85 54.1
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.5e-11 72.8 89 50.6
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.5e-11 72.8 88 51.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-11 72.4 71 53.5
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-11 72.4 71 53.5
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-11 72.4 71 53.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-11 72.4 88 51.1
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.6e-11 72.0 82 47.6
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-11 72.0 71 52.1
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.6e-11 72.0 88 48.9
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.4e-11 71.6 71 52.1
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 3.4e-11 71.6 84 47.6
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.4e-11 71.6 88 52.3
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.4e-11 71.6 87 47.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.4e-11 71.6 88 47.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.5e-11 71.2 71 50.7
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.5e-11 71.2 71 50.7
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.5e-11 71.2 71 50.7
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.5e-11 71.2 71 52.1
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.9e-11 70.9 86 50.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 5.9e-11 70.9 90 51.1
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 5.9e-11 70.9 84 51.2
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 7.7e-11 70.5 71 50.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 7.7e-11 70.5 84 51.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.0e-10 70.1 71 50.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.0e-10 70.1 88 46.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.0e-10 70.1 88 51.1
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.0e-10 70.1 89 49.4
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.0e-10 70.1 92 48.9
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-10 69.7 71 49.3
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.3e-10 69.7 71 49.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-10 69.7 88 51.1
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.7e-10 69.3 71 49.3
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.2e-10 68.9 65 55.4
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.9e-10 68.6 88 50.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.9e-10 68.6 88 50.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.9e-10 68.6 86 48.8
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.9e-10 68.6 89 48.3
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.8e-10 68.2 89 46.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.8e-10 68.2 84 47.6
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-10 67.8 84 50.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-10 67.8 84 50.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.0e-10 67.8 84 50.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 5.0e-10 67.8 84 50.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 5.0e-10 67.8 88 46.6
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 6.5e-10 67.4 86 50.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 6.5e-10 67.4 84 50.0
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 6.5e-10 67.4 86 47.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 6.5e-10 67.4 63 54.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 8.5e-10 67.0 88 50.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.1e-09 66.6 88 50.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-09 66.6 85 44.7
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-09 66.2 88 48.9
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.4e-09 66.2 90 47.8
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.4e-09 66.2 86 45.3
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-09 65.9 88 48.9
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-09 65.9 88 48.9
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-09 65.9 88 48.9
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.9e-09 65.9 88 48.9
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.9e-09 65.9 84 48.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.9e-09 65.9 85 45.9
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.9e-09 65.9 86 46.5
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.9e-09 65.9 88 47.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.9e-09 65.9 83 47.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.5e-09 65.5 84 47.6
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 4.2e-09 64.7 84 48.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.2e-09 64.7 84 48.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.2e-09 64.7 88 46.6
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.5e-09 64.3 81 48.1
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 7.2e-09 63.9 88 46.6
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 9.4e-09 63.5 88 45.5
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 9.4e-09 63.5 88 45.5
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 9.4e-09 63.5 70 50.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.2e-08 63.2 70 50.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-08 62.8 70 51.4
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-08 62.4 88 45.5
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-08 62.4 88 45.5
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.1e-08 62.4 85 44.7
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.7e-08 62.0 83 45.8
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.7e-08 62.0 68 51.5
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.7e-08 62.0 48 64.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 2.7e-08 62.0 88 45.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 2.7e-08 62.0 88 44.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.6e-08 61.6 84 47.6
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 6.1e-08 60.8 75 49.3
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.1e-08 60.8 48 64.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 6.1e-08 60.8 58 63.8
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 7.9e-08 60.5 88 44.3
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 3.9e-07 58.2 68 42.6
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 5.1e-07 57.8 75 41.3
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 4.4e-06 54.7 67 46.3


User provided reference genes

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