Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.3e-210 736.1 377 100.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.4e-169 598.6 388 80.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.8e-165 585.1 388 80.7
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 3.8e-165 585.1 388 79.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.9e-164 582.8 388 78.4
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.6e-163 578.6 388 79.9
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.0e-162 575.1 388 78.9
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.5e-161 570.9 388 77.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 6.3e-160 567.8 388 77.1
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.8e-159 566.2 388 76.8
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.2e-159 563.9 388 77.3
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 9.2e-159 563.9 388 76.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.0e-157 560.5 388 76.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.7e-157 559.7 388 75.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.9e-157 558.9 387 76.2
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 6.6e-157 557.8 383 76.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.1e-156 557.0 383 76.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.9e-156 556.2 383 76.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.5e-156 553.9 388 75.3
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.6e-155 553.1 388 75.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 3.6e-155 552.0 386 74.6
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.6e-155 552.0 388 76.3
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.0e-154 550.4 388 74.2
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 5.2e-154 548.1 388 75.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-154 548.1 388 75.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-154 548.1 388 75.5
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.2e-154 548.1 388 74.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.6e-153 545.8 388 75.5
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 4.4e-153 545.0 388 74.0
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 5.7e-153 544.7 388 74.5
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 7.5e-153 544.3 383 74.4
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 7.5e-153 544.3 388 75.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.7e-152 543.1 388 74.7
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.9e-152 541.6 386 74.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.8e-151 539.7 386 73.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-151 539.7 388 73.2
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 7.0e-151 537.7 389 74.0
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.2e-150 537.0 387 74.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 2.3e-149 532.7 390 72.8
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 3.0e-149 532.3 406 70.7
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.9e-149 531.9 388 72.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 6.6e-149 531.2 383 73.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.9e-148 529.6 388 72.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.3e-148 527.7 388 72.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 4.7e-147 525.0 384 72.4
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.8e-146 523.1 348 80.7
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 3.1e-146 522.3 386 72.3
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.2e-145 520.4 388 70.6
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 7.5e-145 517.7 386 71.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.8e-145 517.3 388 72.2
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 6.4e-144 514.6 386 70.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-143 513.8 389 70.2
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.4e-143 513.5 387 70.8
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.2e-143 512.3 341 81.2
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.1e-143 511.9 383 70.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.4e-143 511.5 387 70.5
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 7.0e-143 511.1 389 71.0
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.7e-142 509.2 388 69.3
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-142 509.2 388 71.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.7e-142 509.2 387 70.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.8e-142 507.7 388 68.8
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.7e-141 506.5 388 69.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.7e-141 506.5 384 68.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.0e-141 505.8 385 69.9
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.6e-141 504.6 388 70.1
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 6.6e-141 504.6 388 70.1
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.6e-141 504.2 420 67.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-140 503.1 420 66.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.3e-140 501.9 399 68.2
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 7.3e-140 501.1 389 69.9
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.7e-139 498.4 389 69.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 4.7e-139 498.4 383 68.7
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.4e-138 496.9 389 69.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-138 496.5 420 66.7
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-138 496.5 420 66.7
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 8.9e-138 494.2 393 69.0
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.2e-137 493.8 383 68.7
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 5.8e-137 491.5 388 69.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 7.5e-137 491.1 392 68.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 9.2e-135 484.2 388 67.0
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-134 483.8 390 67.9
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.6e-132 474.9 391 67.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.3e-132 474.6 386 67.4
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 2.8e-131 472.6 388 64.9
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.6e-131 472.2 348 73.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 6.2e-131 471.5 388 66.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 8.1e-131 471.1 386 66.8
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-130 470.7 414 63.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.1e-130 469.2 388 66.2
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 3.1e-130 469.2 385 67.5
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-129 466.8 386 65.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.6e-129 466.1 386 66.1
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 3.4e-129 465.7 386 66.3
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.4e-129 465.3 387 65.6
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.4e-129 465.3 388 66.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.3e-128 463.8 385 66.5
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.9e-128 461.8 386 65.8
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.9e-128 461.8 386 65.8
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 6.4e-128 461.5 385 66.2
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.1e-127 460.7 385 65.5
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-127 460.3 385 65.7
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 7.1e-127 458.0 348 71.3
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.1e-126 456.4 386 63.5
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 5.1e-125 451.8 347 69.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.5e-124 450.3 385 64.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.1e-123 446.4 385 65.2
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.6e-123 445.7 385 64.4
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.6e-121 439.5 385 63.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.9e-120 436.0 383 62.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.4e-119 433.0 399 60.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.7e-117 426.8 388 62.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 6.6e-117 424.9 337 66.5
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.5e-116 423.7 390 61.3
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-114 417.5 385 61.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.6e-113 412.9 389 59.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.7e-110 402.9 398 57.5
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.7e-109 400.2 389 57.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 4.3e-108 395.6 392 56.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 6.9e-106 388.3 377 57.6
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 9.0e-106 387.9 399 54.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-102 377.5 388 56.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.2e-95 352.4 388 54.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 8.2e-91 338.2 300 58.3
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.9e-87 327.0 228 75.9
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 9.3e-87 324.7 271 65.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.0e-81 307.0 419 45.1
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 9.4e-79 298.1 438 43.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 3.3e-76 289.7 297 58.9
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.2e-75 285.0 369 46.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.7e-67 259.6 265 55.1
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.8e-64 249.6 168 78.0
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.2e-62 244.6 386 40.9
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.9e-55 220.7 467 34.7
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.7e-54 216.1 142 79.6
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.9e-49 199.1 152 73.7
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.2e-48 197.2 235 47.7
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-42 178.3 128 73.4
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.2e-38 164.9 173 56.6
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-32 143.3 168 54.2
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 8.6e-32 142.1 89 80.9
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-30 137.1 155 54.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.7e-30 136.3 393 28.5
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-29 134.0 79 84.8
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.4e-28 130.2 108 61.1
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.2e-27 127.5 138 57.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.9e-26 124.4 120 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.0e-26 122.5 213 39.4
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-22 109.8 82 68.3
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.9e-21 105.5 127 55.9
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-20 104.8 127 55.1
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.8e-20 102.8 101 58.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 8.3e-19 99.0 140 43.6
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-17 94.0 125 52.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 1.0e-16 92.0 125 46.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 4.0e-13 80.1 106 43.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.0e-12 77.8 82 59.8
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 5.8e-12 76.3 51 64.7
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 9.9e-12 75.5 51 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.7e-11 74.7 83 50.6
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.2e-11 74.3 42 88.1
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 4.6e-09 66.6 36 91.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.8e-09 65.9 100 46.0
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.1e-07 62.0 38 81.6
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 4.3e-07 60.1 38 78.9
CBR_g19142 Chara braunii HOM05D007151 ORTHO05D009056 1.6e-06 58.2 94 34.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 2.8e-06 57.4 83 43.4


User provided reference genes

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