Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 2.9e-194 681.8 364 100.0
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.4e-124 450.3 378 70.1
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 5.3e-103 378.6 378 61.9
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 3.8e-101 372.5 373 60.6
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 7.1e-100 368.2 367 63.2
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.4e-95 354.0 377 58.1
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 2.4e-95 353.2 379 58.6
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.0e-94 350.1 390 57.7
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 3.4e-94 349.4 379 57.0
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 6.4e-93 345.1 382 58.4
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.3e-90 337.4 368 56.5
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 8.7e-90 334.7 368 56.8
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.1e-89 334.3 383 56.1
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 7.4e-89 331.6 373 53.9
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.4e-89 331.6 376 54.8
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 7.4e-89 331.6 368 56.2
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 9.6e-89 331.3 369 56.1
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.3e-88 330.9 378 54.0
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 2.8e-88 329.7 375 54.1
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 3.7e-88 329.3 380 55.8
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 6.2e-88 328.6 368 56.0
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 8.2e-88 328.2 392 54.8
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 2.4e-87 326.6 329 61.7
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 9.0e-87 324.7 386 55.2
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-86 324.3 376 54.5
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 4.9e-85 318.9 381 53.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.1e-84 317.8 367 53.7
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-83 314.3 402 50.2
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 6.7e-82 308.5 383 53.0
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 9.7e-81 304.7 370 54.1
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.8e-80 302.4 367 52.3
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 8.2e-80 301.6 376 50.8
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 8.2e-80 301.6 364 54.1
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.1e-79 301.2 382 52.6
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.9e-79 298.5 370 54.1
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.2e-78 297.7 368 54.3
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.5e-78 297.4 375 52.5
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.9e-78 295.4 368 54.9
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.8e-77 292.7 389 50.4
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 3.8e-77 292.7 370 53.5
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 5.0e-77 292.4 376 52.1
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 6.5e-77 292.0 369 52.6
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 8.5e-77 291.6 367 51.8
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 3.2e-76 289.7 376 52.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.2e-75 287.7 372 51.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 3.6e-75 286.2 388 51.0
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 4.6e-75 285.8 357 51.3
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.8e-74 283.9 375 52.8
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 5.7e-73 278.9 380 53.2
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.2e-72 276.9 382 49.7
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 6.3e-72 275.4 369 50.1
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.4e-71 274.2 372 53.5
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 2.0e-70 270.4 368 50.3
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 5.5e-68 262.3 438 42.5
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 6.1e-67 258.8 375 46.4
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 5.1e-66 255.8 373 50.4
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 5.7e-65 252.3 301 55.1
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.7e-65 252.3 368 50.8
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 1.3e-64 251.1 293 54.3
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 1.3e-64 251.1 304 52.3
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 6.3e-64 248.8 460 41.7
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 6.3e-64 248.8 366 50.0
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 3.1e-63 246.5 407 46.9
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 4.1e-63 246.1 370 47.6
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.2e-62 244.6 374 48.4
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 1.5e-62 244.2 389 46.0
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.3e-61 241.1 362 48.1
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 3.8e-61 239.6 364 46.2
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 5.3e-55 219.2 431 40.8
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 5.3e-55 219.2 369 43.4
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 2.9e-53 213.4 379 43.8
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 3.8e-53 213.0 343 43.1
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 5.0e-53 212.6 383 43.6
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 7.2e-52 208.8 404 41.1
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 9.4e-52 208.4 310 48.7
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 2.1e-51 207.2 378 43.7
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 2.7e-51 206.8 376 42.0
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-50 204.5 377 43.5
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 6.8e-50 202.2 407 40.5
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 7.5e-49 198.7 308 46.1
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 2.8e-48 196.8 378 42.6
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.1e-47 193.4 377 42.4
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 9.1e-47 191.8 375 43.2
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 9.1e-47 191.8 375 43.2
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.3e-45 188.0 379 43.0
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 1.3e-45 188.0 377 41.1
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.3e-45 188.0 379 43.0
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 4.2e-44 183.0 295 45.8
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 9.4e-44 181.8 369 40.1
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 3.0e-42 176.8 365 40.3
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 8.8e-42 175.3 373 41.6
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 5.7e-41 172.6 367 40.1
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 6.3e-40 169.1 301 42.2
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.6e-38 164.5 381 39.4
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.0e-38 164.1 380 36.6
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 3.3e-36 156.8 161 61.5
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 9.2e-31 138.7 395 35.2
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 5.9e-30 136.0 374 33.7
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.3e-29 134.0 371 33.7
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 3.9e-29 133.3 370 33.2
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 7.3e-28 129.0 369 33.6
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.6e-27 127.9 274 39.8
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 2.1e-27 127.5 344 30.8
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.2e-25 121.7 347 36.3
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.0e-21 107.1 73 72.6
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.6e-21 105.5 73 72.6
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.5e-20 102.1 127 48.8
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 3.6e-19 100.1 125 47.2
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-18 97.8 121 48.8
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-18 97.8 121 48.8
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.0e-18 96.7 62 77.4
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-17 95.1 97 54.6
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.8e-17 92.0 121 47.9
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-15 86.7 73 63.0
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 5.4e-15 86.3 47 85.1
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 2.1e-14 84.3 70 68.6
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 1.3e-13 81.6 227 36.1
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 8.6e-13 79.0 77 51.9
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 1.9e-12 77.8 95 44.2
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 2.5e-12 77.4 250 31.6
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 4.7e-11 73.2 82 47.6
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.0e-09 67.8 54 64.8
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 2.0e-09 67.8 255 30.6
SGA_v2.0_scaffold1G00727 Striga asiatica HOM05D006327 ORTHO05D016198 4.1e-07 60.1 55 54.5
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 7.8e-06 55.8 48 58.3


User provided reference genes

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