Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 9.2e-237 823.2 416 100.0
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 6.9e-200 700.7 400 86.8
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 7.2e-197 690.6 407 84.3
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 8.7e-195 683.7 407 81.3
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 2.2e-193 679.1 407 82.6
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.8e-193 678.7 407 81.6
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 2.4e-192 675.6 407 81.1
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 2.4e-192 675.6 456 75.9
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 4.1e-192 674.9 407 81.6
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 9.0e-192 673.7 436 78.4
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 6.5e-190 667.5 413 78.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.5e-189 665.6 407 80.8
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 2.5e-189 665.6 407 80.3
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 4.2e-189 664.8 407 79.9
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 2.1e-188 662.5 414 77.3
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.0e-187 660.2 407 79.4
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.1e-187 657.9 407 79.1
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 6.7e-187 657.5 388 83.0
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 3.3e-186 655.2 407 78.6
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 5.7e-186 654.4 409 81.4
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.7e-185 652.9 407 79.6
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.8e-185 652.1 407 78.9
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.7e-185 651.7 407 79.6
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 8.2e-185 650.6 407 78.9
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 3.1e-184 648.7 405 77.8
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 4.1e-184 648.3 406 79.6
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 5.3e-184 647.9 407 75.9
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 9.1e-184 647.1 405 77.8
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 3.4e-183 645.2 405 80.2
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 1.3e-182 643.3 405 77.3
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.2e-182 642.5 407 75.9
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.9e-182 642.1 408 77.9
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.5e-181 639.0 405 77.0
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 2.5e-181 639.0 430 76.3
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 4.2e-181 638.3 426 74.2
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 4.2e-181 638.3 405 76.3
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.6e-180 636.3 407 76.7
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.1e-178 630.2 407 74.0
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.0e-178 629.4 408 74.8
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 7.4e-178 627.5 394 78.7
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 9.7e-178 627.1 400 75.8
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 1.3e-177 626.7 407 73.5
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.2e-177 625.9 409 74.6
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.2e-177 625.9 409 74.6
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 1.4e-176 623.2 407 73.2
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.4e-176 623.2 407 73.0
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 3.1e-176 622.1 405 74.8
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.6e-175 619.8 414 73.7
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 1.7e-174 616.3 413 72.6
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.3e-171 605.9 405 73.6
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 5.2e-171 604.7 386 75.4
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 7.5e-170 600.9 405 71.9
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 2.9e-166 589.0 378 77.0
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.5e-165 586.6 388 71.1
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.5e-165 585.9 368 77.7
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 1.2e-164 583.6 408 70.6
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.0e-163 580.5 517 60.2
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.1e-160 570.5 407 72.5
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.9e-157 559.7 615 51.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 7.2e-157 557.8 318 86.8
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 4.1e-152 542.0 407 68.1
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 5.4e-152 541.6 424 65.8
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 2.0e-151 539.7 349 77.7
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.0e-150 537.3 347 76.7
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.0e-150 537.3 407 68.3
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.7e-150 536.6 366 70.8
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.3e-149 531.9 420 66.2
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.6e-148 528.9 415 66.0
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.7e-148 528.5 407 67.1
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.0e-147 527.3 407 67.3
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 4.0e-147 525.4 328 77.7
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 1.5e-146 523.5 407 66.6
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 1.4e-144 516.9 318 77.0
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 5.9e-143 511.5 408 59.3
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.0e-142 510.8 528 53.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 9.8e-138 494.2 405 58.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 4.9e-137 491.9 403 63.0
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 1.1e-136 490.7 410 57.6
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.3e-134 483.8 418 56.9
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.3e-134 483.0 319 72.4
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 9.8e-130 467.6 438 59.6
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.0e-122 443.4 414 58.7
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 1.0e-118 431.0 257 80.9
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 3.1e-115 419.5 257 77.8
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 3.8e-113 412.5 264 76.9
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 2.4e-112 409.8 261 74.7
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 2.1e-108 396.7 258 72.9
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.2e-103 380.9 441 46.9
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 3.6e-100 369.4 317 63.4
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 8.1e-100 368.2 246 73.2
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 4.6e-95 352.4 301 61.1
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 3.7e-84 316.2 429 40.1
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 8.5e-81 305.1 183 76.0
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.1e-77 294.7 456 38.8
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 3.8e-73 279.6 193 71.0
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 2.5e-72 276.9 171 80.7
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 8.5e-65 251.9 213 61.5
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.2e-56 222.2 121 88.4
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.2e-54 216.1 120 85.8
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 4.7e-47 193.0 411 29.9
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 7.5e-45 185.7 115 79.1
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.7e-44 183.3 101 87.1
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 6.3e-44 182.6 120 68.3
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 3.2e-40 170.2 104 79.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 3.3e-32 143.7 75 88.0
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 3.3e-32 143.7 75 88.0
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 3.6e-31 140.2 75 84.0
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.7e-31 139.8 73 84.9
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.0e-18 97.8 60 70.0
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 5.8e-13 79.7 56 64.3
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 4.1e-11 73.6 205 25.4
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 7.1e-11 72.8 46 78.3
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 9.2e-11 72.4 80 50.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.1e-10 71.2 47 83.0
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 7.3e-08 62.8 42 73.8


User provided reference genes

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