Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.1e-121 437.6 231 100.0
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 7.5e-71 271.2 183 77.0
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.6e-66 255.0 183 72.7
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.4e-63 245.7 184 73.4
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.1e-60 236.5 178 77.5
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 6.0e-60 235.0 183 69.9
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 1.5e-58 230.3 194 64.9
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 5.6e-58 228.4 185 66.5
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.7e-57 225.3 186 63.4
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 6.2e-57 224.9 186 66.7
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.6e-55 219.5 183 63.9
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 4.4e-55 218.8 184 63.0
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 6.4e-54 214.9 265 49.8
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 1.1e-53 214.2 183 64.5
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.4e-53 213.8 213 57.7
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 4.1e-53 212.2 182 63.7
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.7e-52 209.5 210 59.5
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 4.6e-52 208.8 183 62.8
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.0e-52 208.4 183 61.7
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.3e-51 207.2 183 61.2
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 1.3e-51 207.2 183 63.4
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.3e-51 207.2 183 60.7
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 2.3e-51 206.5 183 61.2
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 3.0e-51 206.1 183 62.8
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.0e-51 206.1 183 60.7
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 3.9e-51 205.7 184 62.0
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 3.9e-51 205.7 185 62.2
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 5.1e-51 205.3 185 61.6
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 8.6e-51 204.5 183 62.8
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-50 203.8 180 61.7
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.5e-50 203.8 169 66.3
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-50 203.4 185 60.5
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.9e-50 203.4 180 61.7
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.5e-50 203.0 180 62.8
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 3.3e-50 202.6 183 62.3
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.3e-50 202.2 183 65.0
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.3e-50 202.2 183 65.0
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.3e-50 202.2 172 65.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 5.6e-50 201.8 184 58.2
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 7.3e-50 201.4 183 60.7
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 9.5e-50 201.1 184 60.9
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 9.5e-50 201.1 183 61.7
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.2e-49 200.7 211 55.0
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 1.2e-49 200.7 185 61.6
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.2e-49 200.7 180 61.1
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.6e-49 200.3 180 61.1
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.8e-49 199.5 193 58.5
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.8e-49 199.5 185 60.0
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.8e-49 199.5 183 57.9
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.8e-49 199.5 183 60.7
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 3.6e-49 199.1 183 62.3
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 6.2e-49 198.4 184 61.4
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 8.1e-49 198.0 183 60.1
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 1.1e-48 197.6 184 59.2
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.4e-48 197.2 183 57.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.4e-48 197.2 180 62.2
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.4e-48 197.2 183 61.2
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 1.4e-48 197.2 183 61.7
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.4e-48 197.2 180 61.7
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 1.8e-48 196.8 183 60.7
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 1.8e-48 196.8 184 59.2
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.4e-48 196.4 183 59.6
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 3.1e-48 196.1 185 60.5
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 3.1e-48 196.1 186 62.4
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 4.0e-48 195.7 185 60.5
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 5.2e-48 195.3 183 60.7
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 5.2e-48 195.3 183 60.7
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 6.8e-48 194.9 210 54.8
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 8.9e-48 194.5 183 60.1
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.9e-48 194.5 183 59.6
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.5e-47 193.7 185 61.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.5e-47 193.7 187 60.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 2.0e-47 193.4 183 60.1
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.6e-47 193.0 183 58.5
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 2.6e-47 193.0 174 63.2
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.6e-47 193.0 187 58.8
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 4.4e-47 192.2 183 59.0
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 5.8e-47 191.8 183 59.0
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 9.9e-47 191.0 184 59.2
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 2.2e-46 189.9 187 59.9
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 4.9e-46 188.7 186 59.7
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 4.9e-46 188.7 185 57.8
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 8.4e-46 188.0 240 50.4
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 8.4e-46 188.0 171 60.8
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-45 187.6 183 57.4
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.4e-45 187.2 183 57.4
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.4e-45 187.2 183 58.5
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.9e-45 186.8 187 57.2
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 3.2e-45 186.0 184 57.1
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 4.2e-45 185.7 192 55.2
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 5.4e-45 185.3 184 57.1
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 5.4e-45 185.3 184 57.1
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 5.4e-45 185.3 186 58.6
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.1e-45 184.9 187 55.1
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 9.2e-45 184.5 183 55.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 9.2e-45 184.5 180 58.3
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.6e-44 183.7 196 57.7
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.6e-44 183.7 183 56.3
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.1e-44 183.3 183 55.7
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 3.5e-44 182.6 184 57.1
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 4.6e-44 182.2 180 58.3
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 6.0e-44 181.8 186 56.5
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.8e-44 181.4 179 56.4
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.0e-43 181.0 183 54.6
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.0e-43 181.0 186 55.9
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.0e-43 181.0 184 55.4
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.0e-43 181.0 180 55.6
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.3e-43 180.6 188 55.3
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.9e-43 179.1 183 54.6
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 5.1e-43 178.7 190 55.8
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.6e-43 178.3 190 54.2
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.6e-43 178.3 168 59.5
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.3e-42 175.6 167 58.7
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.3e-42 175.6 167 58.7
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.3e-42 175.6 167 58.7
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 5.6e-42 175.3 180 57.2
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 7.3e-42 174.9 182 54.9
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 9.6e-42 174.5 183 54.1
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.6e-42 174.5 169 58.0
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.2e-41 174.1 194 51.0
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.6e-41 173.7 183 53.6
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 8.1e-41 171.4 182 53.8
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.4e-40 170.6 191 53.4
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.4e-40 170.6 185 56.2
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 4.0e-40 169.1 169 56.2
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 5.3e-40 168.7 172 55.8
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 5.3e-40 168.7 224 50.4
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 7.6e-39 164.9 183 51.4
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 1.3e-38 164.1 193 50.3
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.9e-38 162.9 174 55.2
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.9e-37 160.2 186 50.0
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 2.4e-37 159.8 184 54.3
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 2.4e-37 159.8 179 50.8
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 5.4e-37 158.7 171 59.6
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 5.4e-37 158.7 179 51.4
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.1e-36 156.8 135 63.7
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 1.3e-35 154.1 160 53.8
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.9e-35 152.5 129 68.2
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 8.7e-35 151.4 157 54.8
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.5e-34 150.6 183 48.1
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 1.9e-34 150.2 210 46.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 1.9e-34 150.2 194 50.0
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.5e-34 149.8 183 48.6
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 4.3e-34 149.1 155 54.8
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 7.3e-34 148.3 156 55.1
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.1e-33 146.7 183 50.8
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-33 146.4 133 63.9
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.8e-33 145.6 186 47.8
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 6.2e-33 145.2 135 60.0
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.8e-32 143.7 157 52.2
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.5e-31 139.0 173 46.8
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.8e-31 138.7 196 48.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 2.2e-30 136.7 162 53.1
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 4.9e-30 135.6 146 54.1
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 7.1e-29 131.7 166 50.0
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 1.9e-26 123.6 215 39.5
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.9e-23 111.3 189 39.7
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-21 107.8 143 44.8
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 1.9e-21 107.1 153 45.1
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 7.1e-21 105.1 115 54.8
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.3e-21 104.8 143 43.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 9.3e-21 104.8 106 56.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 7.9e-20 101.7 76 67.1
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 1.3e-19 100.9 166 44.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.3e-19 100.9 183 37.7
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 8.7e-19 98.2 201 38.8
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 1.5e-18 97.4 76 64.5
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.8e-16 90.5 114 47.4
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 9.0e-16 88.2 140 42.1
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.6e-15 86.7 114 46.5
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.6e-15 86.7 114 46.5
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 5.8e-15 85.5 67 64.2
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 8.4e-14 81.6 213 30.0
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 3.2e-13 79.7 192 32.8
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.5e-13 79.0 78 53.8
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 4.6e-12 75.9 49 73.5
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 6.7e-11 72.0 72 58.3
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 5.7e-10 68.9 158 34.2
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.3e-09 67.8 65 58.5
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.8e-09 66.6 222 28.8
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 8.2e-09 65.1 133 38.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.8e-08 63.9 86 45.3
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.8e-08 63.9 48 60.4
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 1.5e-07 60.8 44 65.9


User provided reference genes

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