Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-281 972.6 503 100.0
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.5e-260 900.6 492 96.3
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 5.5e-159 565.1 490 65.7
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.0e-124 450.3 475 58.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 3.7e-123 446.0 537 53.1
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 8.6e-120 434.9 489 54.4
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.8e-118 429.9 492 52.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.0e-117 427.9 470 53.6
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.0e-117 426.4 490 52.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 9.8e-108 394.8 480 50.2
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.9e-107 393.3 481 50.1
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.7e-105 386.7 475 52.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.0e-104 384.8 474 50.8
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 2.5e-103 380.2 472 50.2
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.0e-102 375.2 497 49.1
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.3e-101 373.6 483 48.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.0e-101 372.9 334 63.8
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.5e-100 370.9 502 46.2
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 9.8e-100 368.2 474 49.6
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.9e-99 366.7 495 45.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.9e-99 365.9 494 47.4
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.9e-98 364.0 496 45.6
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 3.2e-98 363.2 487 45.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.2e-97 361.3 460 51.1
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.2e-97 361.3 495 46.9
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-97 360.9 503 46.7
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.0e-97 360.5 480 49.2
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.7e-97 360.1 493 45.4
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.7e-97 360.1 491 46.2
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.6e-97 359.4 460 48.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 6.0e-97 359.0 477 47.6
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.3e-96 357.1 484 46.5
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.0e-96 355.9 493 47.1
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-95 354.4 488 46.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 9.5e-95 351.7 485 45.8
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 9.5e-95 351.7 596 41.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.3e-93 347.1 477 46.5
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 3.1e-93 346.7 478 47.1
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 8.9e-93 345.1 480 48.8
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.0e-92 344.0 465 44.7
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 8.3e-91 338.6 464 46.1
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.2e-89 334.7 503 43.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.2e-89 334.7 428 52.3
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.1e-89 334.0 468 44.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.6e-89 332.8 481 44.3
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 6.0e-89 332.4 294 60.5
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.0e-88 331.6 479 43.6
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.3e-88 331.3 463 44.1
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 8.6e-88 328.6 478 43.1
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.6e-88 328.6 440 50.0
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.9e-87 327.4 474 45.1
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 5.6e-87 325.9 485 43.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.6e-86 324.3 487 42.7
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 3.6e-86 323.2 440 48.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.1e-85 321.6 440 47.7
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.8e-85 320.9 298 58.7
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 4.0e-85 319.7 475 46.3
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 8.9e-85 318.5 510 43.3
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 4.4e-84 316.2 474 43.0
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 5.8e-84 315.8 445 45.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 8.4e-83 312.0 446 43.5
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-82 311.6 499 42.5
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.3e-80 304.7 498 42.4
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-80 304.7 498 42.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.5e-79 300.4 498 42.0
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.3e-79 300.1 357 50.4
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 5.6e-79 299.3 509 39.1
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 9.6e-79 298.5 466 41.8
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 3.6e-78 296.6 493 44.0
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.2e-77 292.7 508 39.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 6.9e-77 292.4 408 44.9
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 6.9e-77 292.4 283 55.8
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 9.0e-77 292.0 298 56.0
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 5.8e-76 289.3 497 39.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.3e-75 288.1 293 55.6
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 4.2e-74 283.1 506 37.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.2e-73 281.6 299 56.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-71 274.6 314 55.1
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.5e-71 273.9 470 41.7
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.6e-70 270.0 286 56.6
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 3.1e-69 266.9 382 42.1
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.0e-69 266.5 281 55.2
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 3.4e-68 263.5 580 36.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.5e-68 263.1 415 42.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.8e-68 262.7 285 54.0
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 9.9e-68 261.9 290 53.1
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.3e-67 261.5 442 40.3
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.8e-67 260.0 358 45.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.8e-67 260.0 286 53.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.8e-67 260.0 441 40.1
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 4.9e-67 259.6 286 53.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 8.4e-67 258.8 286 53.5
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 8.4e-67 258.8 494 40.5
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 2.4e-66 257.3 364 44.2
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 3.2e-66 256.9 286 51.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 5.4e-66 256.1 440 40.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 9.3e-66 255.4 248 55.2
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.2e-65 255.0 448 39.7
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.6e-65 254.6 499 38.5
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 6.0e-65 252.7 296 48.3
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.9e-64 250.0 229 57.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.1e-63 248.4 291 50.9
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.9e-63 247.7 358 47.8
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-63 246.9 290 51.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 7.4e-63 245.7 292 46.6
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.8e-62 243.8 287 51.2
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.8e-62 243.8 287 51.2
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.8e-62 243.8 287 51.2
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.2e-59 234.2 290 47.2
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.0e-56 225.3 433 37.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 3.0e-56 223.8 347 40.9
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.1e-55 221.9 332 41.9
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.4e-53 214.2 254 51.2
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 7.6e-52 209.1 255 49.4
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 4.2e-50 203.4 270 46.7
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.5e-50 203.0 270 46.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.1e-50 202.6 327 43.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.0e-48 198.7 210 51.4
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-48 198.4 269 45.7
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 9.7e-47 192.2 418 38.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 5.3e-45 186.4 294 40.8
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.9e-45 186.0 270 45.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-44 184.1 388 37.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 5.9e-44 183.0 216 50.5
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 2.5e-42 177.6 282 39.0
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.3e-39 166.8 123 61.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.2e-38 164.5 305 39.3
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.0e-36 157.9 163 51.5
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 8.5e-35 152.5 191 52.9
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 9.4e-34 149.1 100 69.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.4e-32 145.2 210 41.9
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.0e-32 144.1 208 46.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-28 131.7 277 36.1
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.7e-24 116.3 320 34.7
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.7e-22 110.5 297 27.6
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.1e-21 107.1 99 50.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 5.5e-18 96.7 161 39.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.4e-16 92.0 130 40.8
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.0e-16 90.5 135 45.9
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 8.8e-16 89.4 293 25.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.2e-15 89.0 101 50.5
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 6.3e-14 83.2 124 43.5
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.1e-13 82.4 154 41.6
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.5e-07 62.0 81 53.1
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 2.2e-06 58.2 260 31.2


User provided reference genes

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