Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 0.0e+00 1261.5 721 100.0
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 2.0e-82 311.2 471 48.6
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 2.0e-82 311.2 478 48.7
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 6.6e-81 306.2 458 51.1
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 8.6e-81 305.8 476 49.2
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.5e-77 295.0 486 44.0
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 2.6e-77 294.3 479 50.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 9.8e-77 292.4 491 49.9
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 2.2e-76 291.2 473 45.7
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.4e-75 288.5 459 49.0
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.0e-75 286.2 477 45.9
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.2e-75 285.8 479 45.1
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.0e-74 284.6 468 48.3
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 2.7e-74 284.3 476 46.2
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 4.6e-74 283.5 456 47.1
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.7e-73 281.6 475 44.4
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.3e-73 281.2 456 44.7
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 5.0e-73 280.0 474 46.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 6.6e-73 279.6 482 46.3
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 2.5e-72 277.7 474 43.5
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 2.5e-72 277.7 467 43.0
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.3e-72 276.2 469 43.7
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 9.5e-72 275.8 470 49.1
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.6e-71 275.0 469 48.8
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 8.9e-70 269.2 479 45.3
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.8e-69 266.5 480 43.1
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.9e-67 261.5 481 42.8
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.7e-66 257.7 481 46.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 3.0e-65 254.2 474 43.7
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.1e-64 252.3 493 45.4
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 9.5e-64 249.2 462 42.4
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 2.8e-63 247.7 423 47.0
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 3.6e-63 247.3 478 43.1
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.4e-62 245.4 474 40.7
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 3.1e-62 244.2 491 41.3
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 8.9e-62 242.7 473 44.0
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.4e-61 240.4 469 43.5
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 7.1e-59 233.0 486 39.7
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.6e-58 231.9 471 40.6
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 4.6e-58 230.3 371 42.3
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.0e-57 229.2 460 40.0
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.3e-57 228.0 455 39.1
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 3.9e-57 227.3 454 41.6
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 5.1e-57 226.9 473 41.4
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.5e-56 225.3 473 41.4
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-55 222.2 460 42.2
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.6e-55 221.9 474 38.2
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.1e-54 219.2 471 41.0
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 5.8e-53 213.4 452 42.3
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 3.8e-52 210.7 465 39.8
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.8e-52 210.7 476 39.9
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.2e-51 207.6 453 38.2
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.6e-50 205.3 483 41.8
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 8.7e-49 199.5 389 41.4
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.5e-48 198.0 492 38.0
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 2.1e-47 194.9 450 38.4
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.8e-46 191.8 437 40.5
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 9.9e-45 186.0 462 36.8
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.9e-44 184.5 464 35.3
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 1.9e-43 181.8 452 35.8
CSS0022381 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 4.2e-43 180.6 93 86.0
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 2.1e-42 178.3 382 37.4
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 4.6e-42 177.2 468 33.5
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.8e-41 175.3 467 35.5
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 2.3e-41 174.9 471 37.2
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.1e-40 172.6 378 42.3
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.9e-40 171.8 404 34.7
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.6e-40 170.2 393 37.7
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.8e-38 165.2 493 34.9
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 9.0e-38 162.9 442 37.6
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 5.8e-37 160.2 456 37.5
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 3.8e-36 157.5 411 39.2
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 1.1e-35 156.0 475 34.7
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.4e-35 154.8 453 38.0
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 6.0e-34 150.2 342 37.4
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 7.9e-34 149.8 457 34.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 8.7e-33 146.4 473 34.9
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 8.7e-33 146.4 376 37.5
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.5e-32 145.6 452 41.8
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.9e-32 145.2 470 33.6
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.6e-31 142.1 410 35.4
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.8e-31 141.4 196 45.9
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 8.2e-31 139.8 386 36.0
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.4e-30 138.3 448 35.3
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 3.1e-30 137.9 332 37.3
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 3.1e-30 137.9 469 34.3
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 9.0e-30 136.3 257 38.9
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.0e-29 135.2 371 36.7
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.4e-29 134.4 161 57.8
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.7e-28 132.1 151 58.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.2e-27 127.5 330 36.4
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 5.5e-27 127.1 394 34.0
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 9.3e-27 126.3 457 30.2
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.1e-22 112.8 315 33.3
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.4e-22 111.7 450 28.4
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 2.0e-21 108.6 115 49.6
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 4.5e-21 107.5 122 47.5
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.6e-21 106.7 269 35.7
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 7.6e-21 106.7 378 30.7
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 8.5e-20 103.2 355 29.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.5e-19 101.7 354 28.2
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.2e-19 100.9 457 26.9
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 6.1e-18 97.1 405 27.9
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.1e-17 94.0 297 30.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 8.8e-17 93.2 368 29.9
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 3.3e-16 91.3 254 40.2
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.3e-15 89.4 388 25.8
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.3e-15 87.0 375 29.6
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 2.6e-13 81.6 305 29.5
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 5.9e-13 80.5 55 78.2
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 5.9e-13 80.5 55 78.2
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 7.7e-13 80.1 136 45.6
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.0e-12 79.7 55 78.2
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.0e-12 79.7 55 78.2
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 2.2e-12 78.6 54 79.6
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 2.9e-12 78.2 325 32.0
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 3.8e-12 77.8 379 26.1
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 5.0e-12 77.4 45 88.9
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 5.0e-12 77.4 52 80.8
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 5.0e-12 77.4 113 37.2
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 6.5e-12 77.0 54 77.8
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 6.5e-12 77.0 52 80.8
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 8.5e-12 76.6 43 90.7
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 8.5e-12 76.6 43 90.7
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.1e-11 76.3 45 86.7
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.1e-11 76.3 45 86.7
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.1e-11 76.3 52 80.8
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.4e-11 75.9 74 62.2
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.9e-11 75.5 45 86.7
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.9e-11 75.5 45 86.7
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 2.5e-11 75.1 194 32.5
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 3.2e-11 74.7 45 86.7
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.2e-11 73.6 199 33.7
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 2.3e-09 68.6 339 28.0
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 6.7e-09 67.0 59 50.8
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.4e-08 64.3 217 31.8
Hma1.2p1_0859F.1_g229480 Hydrangea macrophylla HOM05D067761 ORTHO05D006229 1.1e-06 59.7 54 61.1
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 9.1e-06 56.6 159 44.0


User provided reference genes

Program Settings