Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041332 Camellia sinensis var. sinensis HOM05D001050 ORTHO05D008289 4.0e-26 120.6 57 100.0
Rhsim03G0260300 Rhododendron simsii HOM05D001050 ORTHO05D008289 2.8e-19 97.8 50 90.0
CSS0018567 Camellia sinensis var. sinensis HOM05D001050 ORTHO05D008289 3.7e-19 97.4 46 100.0
RcHm_v2.0_Chr4g0405281 Rosa chinensis HOM05D001050 ORTHO05D008289 3.8e-16 87.4 45 86.7
Prupe.1G100700 Prunus persica HOM05D001050 ORTHO05D008289 1.4e-15 85.5 46 89.1
CiPaw.15G162900 Carya illinoinensis HOM05D001050 ORTHO05D008289 3.2e-15 84.3 46 84.8
arahy.Tifrunner.gnm1.ann1.J6ADBZ Arachis hypogaea HOM05D001050 ORTHO05D008289 4.2e-15 84.0 46 82.6
FAN12G1960 Fragaria x ananassa HOM05D001050 ORTHO05D008289 9.3e-15 82.8 47 83.0
FvH4_4g08740 Fragaria vesca HOM05D001050 ORTHO05D008289 1.2e-14 82.4 47 80.9
FAN17G0516 Fragaria x ananassa HOM05D001050 ORTHO05D008289 2.7e-14 81.3 50 78.0
TPR.G24846 Trifolium pratense HOM05D001050 ORTHO05D008289 2.7e-14 81.3 44 84.1
TAR625G0323 Trochodendron aralioides HOM05D001050 ORTHO05D008289 4.6e-14 80.5 46 80.4
Nn2g12504 Nelumbo nucifera HOM05D001050 ORTHO05D008289 6.1e-14 80.1 46 82.6
Peaxi162Scf00038g00328 Petunia axillaris HOM05D001050 ORTHO05D008289 6.1e-14 80.1 46 84.8
Sopen07g002230 Solanum pennellii HOM05D001050 ORTHO05D008289 7.9e-14 79.7 46 84.8
Thecc.09G155900 Theobroma cacao HOM05D001050 ORTHO05D008289 7.9e-14 79.7 46 84.8
QL02p094578 Quercus lobata HOM05D001050 ORTHO05D008289 1.0e-13 79.3 56 71.4
SalBow1G8460 Salvia bowleyana HOM05D001050 ORTHO05D008289 1.4e-13 79.0 46 82.6
Ca_21159_v3 Cicer arietinum L. HOM05D001050 ORTHO05D008289 1.8e-13 78.6 42 83.3
Duzib168G0517 Durio zibethinus HOM05D001050 ORTHO05D008289 2.3e-13 78.2 46 84.8
TWI34G0722 Tripterygium wilfordii HOM05D001050 ORTHO05D008289 2.3e-13 78.2 43 83.7
COL.COLO4_36563 Corchorus olitorius HOM05D001050 ORTHO05D008289 3.9e-13 77.4 42 83.3
DCAR_024733 Daucus carota HOM05D001050 ORTHO05D008289 3.9e-13 77.4 46 82.6
DCAR_031935 Daucus carota HOM05D001050 ORTHO05D008289 3.9e-13 77.4 46 82.6
HPP92_015862 Vanilla planifolia HOM05D001050 ORTHO05D008289 3.9e-13 77.4 42 83.3
HPP92_015866 Vanilla planifolia HOM05D001050 ORTHO05D008289 3.9e-13 77.4 42 83.3
Gohir.A05G345900 Gossypium hirsutum HOM05D001050 ORTHO05D008289 6.7e-13 76.6 46 80.4
Gohir.D04G087400 Gossypium hirsutum HOM05D001050 ORTHO05D008289 6.7e-13 76.6 46 80.4
Gorai.012G097500 Gossypium raimondii HOM05D001050 ORTHO05D008289 6.7e-13 76.6 46 80.4
Oeu027624.1 Olea europaea HOM05D001050 ORTHO05D008289 8.8e-13 76.3 46 80.4
Solyc07g006120.3 Solanum lycopersicum HOM05D001050 ORTHO05D008289 1.1e-12 75.9 46 82.6
ClCG11G012710 Citrullus lanatus HOM05D001050 ORTHO05D008289 1.5e-12 75.5 46 80.4
PGSC0003DMG400011161 Solanum tuberosum HOM05D001050 ORTHO05D008289 1.5e-12 75.5 46 80.4
Migut.K00292 Erythranthe guttata HOM05D001050 ORTHO05D008289 1.9e-12 75.1 46 80.4
Sed0007478 Sechium edule HOM05D001050 ORTHO05D008289 1.9e-12 75.1 46 80.4
Medtr4g130190 Medicago truncatula HOM05D001050 ORTHO05D008289 2.5e-12 74.7 40 82.5
Cfa020764 Carpinus fangiana HOM05D001050 ORTHO05D008289 3.3e-12 74.3 46 78.3
Lalb_Chr13g0300631 Lupinus albus HOM05D001050 ORTHO05D008289 3.3e-12 74.3 46 78.3
Nitab4.5_0001036g0050 Nicotiana tabacum HOM05D001050 ORTHO05D008289 3.3e-12 74.3 46 80.4
PSO063G3509 Papaver somniferum HOM05D001050 ORTHO05D008289 3.3e-12 74.3 46 76.1
Psat0s2826g0080 Pisum sativum HOM05D001050 ORTHO05D008289 3.3e-12 74.3 39 82.1
FAN22G1319 Fragaria x ananassa HOM05D001050 ORTHO05D008289 5.7e-12 73.6 49 75.5
Lj4g0004322 Lotus japonicus HOM05D001050 ORTHO05D008289 7.4e-12 73.2 39 76.9
CsaV3_2G007770 Cucumis sativus L. HOM05D001050 ORTHO05D008289 9.7e-12 72.8 46 76.1
MD16G1259300 Malus domestica HOM05D001050 ORTHO05D008289 9.7e-12 72.8 40 80.0
PSO782G2474 Papaver somniferum HOM05D001050 ORTHO05D008289 1.7e-11 72.0 46 76.1
Atru.chr7.414 Acer truncatum HOM05D001050 ORTHO05D008289 2.2e-11 71.6 44 75.0
AUR62039769 Chenopodium quinoa HOM05D001050 ORTHO05D008289 2.2e-11 71.6 46 76.1
Phvul.003G152800 Phaseolus vulgaris HOM05D001050 ORTHO05D008289 2.8e-11 71.2 46 78.3
Potri.018G101200 Populus trichocarpa HOM05D001050 ORTHO05D008289 2.8e-11 71.2 37 86.5
Cc06_g14300 Coffea canephora HOM05D001050 ORTHO05D008289 3.7e-11 70.9 46 76.1
Ciclev10008722m.g Citrus clementina HOM05D001050 ORTHO05D008289 4.8e-11 70.5 46 71.7
PGR142G3225 Punica granatum HOM05D001050 ORTHO05D008289 4.8e-11 70.5 40 77.5
BraA03t15049Z Brassica rapa HOM05D001050 ORTHO05D008289 6.3e-11 70.1 46 78.3
SGA_v2.0_scaffold355G49781 Striga asiatica HOM05D001050 ORTHO05D008289 6.3e-11 70.1 46 76.1
Duzib187G1651 Durio zibethinus HOM05D001050 ORTHO05D008289 8.2e-11 69.7 46 78.3
Manes.06G032800 Manihot esculenta HOM05D001050 ORTHO05D008289 8.2e-11 69.7 46 73.9
GSVIVG01023711001 Vitis vinifera HOM05D001050 ORTHO05D008289 1.1e-10 69.3 46 76.1
A03p59920 Brassica napus HOM05D001050 ORTHO05D008289 1.4e-10 68.9 46 76.1
C07p57980 Brassica napus HOM05D001050 ORTHO05D008289 1.4e-10 68.9 46 76.1
BolC7t46256H Brassica oleracea HOM05D001050 ORTHO05D008289 1.4e-10 68.9 46 76.1
AUR62028390 Chenopodium quinoa HOM05D001050 ORTHO05D008289 1.4e-10 68.9 46 71.7
Aa31LG2G20000 Aethionema arabicum HOM05D001050 ORTHO05D008289 1.8e-10 68.6 46 73.9
Glyma.17G070200 Glycine max HOM05D001050 ORTHO05D008289 1.8e-10 68.6 46 73.9
HanXRQChr09g0244701 Helianthus annuus HOM05D001050 ORTHO05D008289 1.8e-10 68.6 45 68.9
BcaNung00562 Brassica carinata HOM05D001050 ORTHO05D008289 2.4e-10 68.2 46 76.1
CAN.G1190.10 Capsicum annuum HOM05D001050 ORTHO05D008289 3.1e-10 67.8 46 76.1
ECA240G3751 Erigeron canadensis HOM05D001050 ORTHO05D008289 3.1e-10 67.8 45 64.4
Sc14g0001020 Simmondsia chinensis HOM05D001050 ORTHO05D008289 3.1e-10 67.8 46 71.7
Sp7g28400 Schrenkiella parvula HOM05D001050 ORTHO05D008289 4.1e-10 67.4 46 71.7
VMungo1215G0246 Vigna mungo HOM05D001050 ORTHO05D008289 5.3e-10 67.0 46 71.7
Carub.0007s1007 Capsella rubella HOM05D001050 ORTHO05D008289 6.9e-10 66.6 46 73.9
unitig_0.g2692 Utricularia gibba HOM05D001050 ORTHO05D008289 6.9e-10 66.6 42 73.8
Aqoxy5G01192 Aquilegia oxysepala HOM05D001050 ORTHO05D008289 9.1e-10 66.2 45 68.9
CANSAT11G2532 Cannabis sativa HOM05D001050 ORTHO05D008289 9.1e-10 66.2 46 71.7
THA.LOC104803529 Tarenaya hassleriana HOM05D001050 ORTHO05D008289 1.2e-09 65.9 46 71.7
MBI15_g26078_MAGBIO Magnolia biondii HOM05D001050 ORTHO05D008289 2.0e-09 65.1 46 71.7
AT4G30510 Arabidopsis thaliana HOM05D001050 ORTHO05D008289 3.4e-09 64.3 46 71.7
EL10Ac8g18887 Beta vulgaris HOM05D001050 ORTHO05D008289 5.9e-09 63.5 46 67.4
CARHR238400 Cardamine hirsuta HOM05D001050 ORTHO05D008289 7.7e-09 63.2 46 69.6
ATR0580G127 Amborella trichopoda HOM05D001050 ORTHO05D008289 2.2e-08 61.6 48 62.5
Ah.09g228640 Amaranthus hybridus HOM05D001050 ORTHO05D008289 3.2e-07 57.8 42 73.8
SEGI_41321 Sequoiadendron giganteum HOM05D001050 ORTHO05D008289 9.4e-07 56.2 40 60.0
Os02g0791800 Oryza sativa ssp. japonica HOM05D001050 ORTHO05D008289 2.1e-06 55.1 35 65.7


User provided reference genes

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