Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 8.0e-91 337.0 165 100.0
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.4e-10 70.5 43 79.1
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 4.0e-10 68.9 33 97.0
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 4.0e-10 68.9 33 97.0
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 5.3e-10 68.6 33 93.9
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 9.0e-10 67.8 33 93.9
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 9.0e-10 67.8 33 93.9
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 9.0e-10 67.8 32 93.8
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 9.0e-10 67.8 32 93.8
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 9.0e-10 67.8 33 93.9
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.5e-09 67.0 32 90.6
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.5e-09 67.0 33 93.9
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.5e-09 67.0 33 93.9
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-09 66.6 32 93.8
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-09 66.6 32 93.8
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-09 66.6 32 93.8
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-09 66.6 32 93.8
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.0e-09 66.6 33 90.9
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 2.6e-09 66.2 33 90.9
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.6e-09 66.2 33 93.9
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 2.6e-09 66.2 33 90.9
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 3.4e-09 65.9 33 90.9
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 3.4e-09 65.9 32 93.8
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 3.4e-09 65.9 33 93.9
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.5e-09 65.5 32 90.6
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 4.5e-09 65.5 33 90.9
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 5.8e-09 65.1 33 90.9
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 5.8e-09 65.1 33 87.9
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 5.8e-09 65.1 33 84.8
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 1.0e-08 64.3 83 42.2
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.0e-08 64.3 32 87.5
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.0e-08 64.3 85 43.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.0e-08 64.3 36 80.6
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.0e-08 64.3 33 87.9
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.0e-08 64.3 32 90.6
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 1.0e-08 64.3 33 87.9
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.3e-08 63.9 146 31.5
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 1.3e-08 63.9 30 96.7
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.7e-08 63.5 33 87.9
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 1.7e-08 63.5 33 87.9
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 2.2e-08 63.2 33 87.9
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 2.2e-08 63.2 33 87.9
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 2.2e-08 63.2 32 87.5
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 2.2e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 2.9e-08 62.8 33 87.9
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 2.9e-08 62.8 33 87.9
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.8e-08 62.4 33 84.8
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.8e-08 62.4 33 84.8
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 4.9e-08 62.0 30 93.3
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 4.9e-08 62.0 30 93.3
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 4.9e-08 62.0 33 84.8
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 6.5e-08 61.6 32 78.1
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 6.5e-08 61.6 30 90.0
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 6.5e-08 61.6 33 84.8
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 6.5e-08 61.6 32 84.4
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 6.5e-08 61.6 33 84.8
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 84.8
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 81.8
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 84.8
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 8.4e-08 61.2 32 90.6
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 81.8
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 81.8
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 81.8
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 81.8
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 8.4e-08 61.2 33 84.8
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 8.4e-08 61.2 44 63.6
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.1e-07 60.8 30 86.7
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 1.1e-07 60.8 30 93.3
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 1.4e-07 60.5 33 81.8
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.4e-07 60.5 31 87.1
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.4e-07 60.5 31 87.1
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 1.4e-07 60.5 29 89.7
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.4e-07 60.5 31 87.1
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 1.9e-07 60.1 30 86.7
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.9e-07 60.1 31 83.9
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 1.9e-07 60.1 32 84.4
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.9e-07 60.1 33 81.8
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.9e-07 60.1 55 58.2
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 1.9e-07 60.1 33 81.8
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 2.5e-07 59.7 33 81.8
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.5e-07 59.7 33 81.8
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 2.5e-07 59.7 30 90.0
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 3.2e-07 59.3 33 78.8
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 3.2e-07 59.3 33 78.8
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.2e-07 59.3 32 84.4
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 3.2e-07 59.3 29 93.1
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 3.2e-07 59.3 32 87.5
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 3.2e-07 59.3 33 81.8
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 4.2e-07 58.9 31 80.6
Medtr8g085230 Medicago truncatula HOM05D003773 ORTHO05D004377 4.2e-07 58.9 33 81.8
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 5.5e-07 58.5 33 78.8
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 5.5e-07 58.5 33 78.8
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 5.5e-07 58.5 33 81.8
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 5.5e-07 58.5 31 83.9
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 5.5e-07 58.5 32 81.2
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 7.1e-07 58.2 58 51.7
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 7.1e-07 58.2 32 84.4
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 9.3e-07 57.8 33 75.8
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 9.3e-07 57.8 33 78.8
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 9.3e-07 57.8 30 86.7
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 1.2e-06 57.4 28 89.3
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 1.2e-06 57.4 32 81.2
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.2e-06 57.4 30 83.3
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.2e-06 57.4 33 75.8
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.2e-06 57.4 33 75.8
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.2e-06 57.4 33 75.8
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 1.6e-06 57.0 31 77.4
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 1.6e-06 57.0 33 81.8
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 1.6e-06 57.0 28 89.3
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.6e-06 57.0 32 78.1
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 1.6e-06 57.0 84 39.3
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 2.1e-06 56.6 32 87.5
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 2.1e-06 56.6 33 75.8
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.1e-06 56.6 33 75.8
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 2.1e-06 56.6 33 75.8
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 2.1e-06 56.6 28 89.3
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.1e-06 56.6 33 75.8
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.7e-06 56.2 28 85.7
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.7e-06 56.2 29 89.7
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 2.7e-06 56.2 43 60.5
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 3.5e-06 55.8 33 75.8
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 3.5e-06 55.8 33 78.8
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 4.6e-06 55.5 31 80.6
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 4.6e-06 55.5 32 75.0
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 7.9e-06 54.7 47 55.3


User provided reference genes

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